Gene Information

Name : EcSMS35_1125 (EcSMS35_1125)
Accession : YP_001743197.1
Strain : Escherichia coli SMS-3-5
Genome accession: NC_010498
Putative virulence/resistance : Virulence
Product : immunoglobulin-binding regulator A-like protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG3969
EC number : -
Position : 1145153 - 1146385 bp
Length : 1233 bp
Strand : +
Note : identified by similarity to GB:AAM53133.1; match to protein family HMM PF01507

DNA sequence :
ATGAACAATGATTTTTCCGCGAAAAAAATCCTGACGGGTGAGGATGTCCTGTGTGCGGCCGTTCACCGTATTGAGTGGTT
GTTTGAGACATTTTCTTCTGTCTGTTTGTCTTTTTCCGGAGGAAAAGACTCTACTGTGCTGCTCCATCTTACGGCCGATG
TGGCTCGCAGGAAGAAACGTCGTTTCTCTGTATTATTCATTGACTGGGAAGCTCAGTACCAGTGCACAATTGCACACATT
CTGAAGATGAGGGAGATGTATCGGGATGTGACGGAGACTTTTTACTGGGTGGCACTCCCCCTGACTACGGTAAACGGTGT
CTCTCAGTTTCAGCCGGAATGGATATGCTGGGAACCAGGTGTGGAGTGGGTTCGTCAGCCACCAGATGACGCTATTACAG
ATATGTCGTACTTCCCATTTTATCGGTATGCCATGACGTTTGAAGAATTTGTTCCGGCATTTTCTTCCTGGTTTGCCGGT
AACCGGTGTGGAGTGGCAATACTGACTGGTGTTCGTGCTGATGAATCGCTCAATCGCTTTGTGGGACTGGTGTCTCAGCG
CAAACTGAGATATGCAGATGATAAACCCTGGACCACAGCGTCACCTGAAGGGTTTTATTACACCTTGTATCCGTTGTATG
ACTGGAAAGCTCGTGATATATGGATATATAACGCCAGAACCCGAGCTATCTACAATCCCCTGTATGACCTGATGTACCGT
GCCGGCGTGCCGTTACGCAACATGCGGGTCTGTGAGCCTTTTGGCCCGGAACAGCGTAAGGGACTGTGGCTTTACCATGT
TCTGGAGCCGGAAACCTGGGCCAGGATGTGTGAGCGGGTGTCGGGTGCTGCCAGCGGGGCGCTTTATGCCAATGAGAGCG
GTGCCTATTTTGCCCTGCGTAAGCGTATCACGAAGCCACCTCATCATACCTGGCGTAGCTATGCGATGTTCCTGCTGGAT
GTGATGCCGGAAAGAACGGCAGAACATTACCGTAATAAAATTGCTGTCTACCTGCGCTGGTATCAGACGCGGGGCTTCCC
GGATGACATCCCGGATGAACAGGAGAATGACCTGGGGAGCCGGGATATCCCGTCCTGGCGACGTATCTGTAAGACACTCA
TAAAGAATGATTTCTGGTGTCGGACCCTCTCCTTCAGTCCGAACAAACCCCGGCACTATGAACGTTATCTGCAGCGTATG
AAAGAAAGGAGGAAGGAATGGGGGATTCTGTGA

Protein sequence :
MNNDFSAKKILTGEDVLCAAVHRIEWLFETFSSVCLSFSGGKDSTVLLHLTADVARRKKRRFSVLFIDWEAQYQCTIAHI
LKMREMYRDVTETFYWVALPLTTVNGVSQFQPEWICWEPGVEWVRQPPDDAITDMSYFPFYRYAMTFEEFVPAFSSWFAG
NRCGVAILTGVRADESLNRFVGLVSQRKLRYADDKPWTTASPEGFYYTLYPLYDWKARDIWIYNARTRAIYNPLYDLMYR
AGVPLRNMRVCEPFGPEQRKGLWLYHVLEPETWARMCERVSGAASGALYANESGAYFALRKRITKPPHHTWRSYAMFLLD
VMPERTAEHYRNKIAVYLRWYQTRGFPDDIPDEQENDLGSRDIPSWRRICKTLIKNDFWCRTLSFSPNKPRHYERYLQRM
KERRKEWGIL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
z1203 CAD33763.1 Z1203 protein Not tested PAI I 536 Protein 0.0 95
ibrA ADD91735.1 putative phosphoadenosine phosphosulfate reductase IbrA Not tested PAI-I AL862 Protein 0.0 93
Z1643 AAQ19139.1 putative phosphoadenosine phosphosulfate reductase Not tested PAI I CL3 Protein 0.0 93
Z1203 NP_286738.1 hypothetical protein Not tested TAI Protein 0.0 92
Z1643 NP_287146.1 hypothetical protein Not tested TAI Protein 0.0 92
APECO1_3502 YP_854308.1 hypothetical protein Not tested PAI I APEC-O1 Protein 0.0 92
c5209 NP_757057.1 hypothetical protein Not tested PAI II CFT073 Protein 0.0 92
ORF_31 AAZ04441.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 0.0 92
t4277 NP_807875.1 hypothetical protein Not tested SPI-7 Protein 1e-176 88
STY4583 NP_458667.1 conserved hypothetical protein Not tested SPI-7 Protein 2e-176 88

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcSMS35_1125 YP_001743197.1 immunoglobulin-binding regulator A-like protein VFG1504 Protein 0.0 95