Gene Information

Name : sitA_1 (EcSMS35_A0084)
Accession : YP_001739972.1
Strain :
Genome accession: NC_010488
Putative virulence/resistance : Virulence
Product : iron/manganese transport system periplasmic binding protein SitA
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 63921 - 64835 bp
Length : 915 bp
Strand : -
Note : identified by similarity to GB:AAT11264.1; match to protein family HMM PF01297

DNA sequence : 
ATGCTCTCAATAAAAAAAGTAACCATGCTCTTGGGGTGCCTAGTCCTCACCTGCTCGATAGCATTTCAGGCGAGTGCAGC
TGAAAAATTCAAGGTCATTACAACTTTTACCATCATCGCAGATATGGCCAAAAACGTGGCTGGAGATGCTGCAGAAGTCT
CATCCATAACCAAGCCTGGTGCAGAAATTCATGAGTATCAGCCTACCCCTGGCGATATTAAACGTGCGCAGGGGGCACAA
CTGATTCTCGCCAATGGTATGAATCTGGAATTGTGGTTCCAACGCTTTTACCAGCATCTCAATGGGGTTCCAGAAGTAAT
TGTCTCTTCGGGTGTGACGCCAGTAGGGATCACCGAAGGGCCCTATGAGGGCAAACCTAACCCCCATGCCTGGATGTCGC
CAGATAATGCTCTGATTTACGTCGATAATATTCGTGATGCGTTTATAAAATACGATCCGGCAAATGCACAAACCTACCAA
CGTAATGCCGATACTTATAAAGCCAAGATTACCCAAACCCTTGCCCCCCTGCGTAAGCAGATTGCGGAACTCCCTGAGAA
TCAGCGATGGATGGTCACCAGTGAAGGGGCTTTTTCTTATCTCGCACGCGATTTGGGGCTAAAAGAGCTTTATCTGTGGC
CGATTAATGCCGATCAACAAGGAACACCGCAGCAGGTACGTAAGGTTGTTGATATAGTTAAGAAAAATCATATCCCGGCA
GTCTTTAGCGAGAGTACGATTTCCGATAAACCAGCGCGTCAGGTTGCGCGTGAAACCGGCGCGCACTACGGTGGTGTGCT
CTATGTCGATTCCCTGAGCACAGAAAACGGCCCGGTACCTACGTATATCGACCTTCTGAAGGTTACTACCAGTACGCTGG
TACAGGGAATTAAAGCCGGAAAAAGGGAGAAATAA

Protein sequence : 
MLSIKKVTMLLGCLVLTCSIAFQASAAEKFKVITTFTIIADMAKNVAGDAAEVSSITKPGAEIHEYQPTPGDIKRAQGAQ
LILANGMNLELWFQRFYQHLNGVPEVIVSSGVTPVGITEGPYEGKPNPHAWMSPDNALIYVDNIRDAFIKYDPANAQTYQ
RNADTYKAKITQTLAPLRKQIAELPENQRWMVTSEGAFSYLARDLGLKELYLWPINADQQGTPQQVRKVVDIVKKNHIPA
VFSESTISDKPARQVARETGAHYGGVLYVDSLSTENGPVPTYIDLLKVTTSTLVQGIKAGKREK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-110 77
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 9e-111 75
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 9e-111 75
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 9e-111 75
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 6e-111 75

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitA_1 YP_001739972.1 iron/manganese transport system periplasmic binding protein SitA BAC0349 Protein 4e-111 75
sitA_1 YP_001739972.1 iron/manganese transport system periplasmic binding protein SitA BAC0439 Protein 3e-90 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitA_1 YP_001739972.1 iron/manganese transport system periplasmic binding protein SitA VFG0525 Protein 4e-111 75