Gene Information

Name : sitD_1 (EcSMS35_A0081)
Accession : YP_001739969.1
Strain :
Genome accession: NC_010488
Putative virulence/resistance : Virulence
Product : iron/manganese transport system membrane protein SitD
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 61386 - 62243 bp
Length : 858 bp
Strand : -
Note : identified by similarity to GB:AAT11267.1; similarity to GB:ABA54734.1; match to protein family HMM PF00950

DNA sequence : 
ATGATGGCATTATTACTGGAGCCACTGCAGTTCACCTTTATGAGTCACGCACTGCTGATTTCACTGGTAGTTTCCATACC
CTGTGCGCTGCTGTCGGTCTTTCTGGTCCTGAAAAGTTGGGCACTGATGGGTGACGCGATGAGTCATGCGGTTTTTCCTG
GCATCGTGCTTGCCTGGATTCTGGGGTTACCTCTGGCTACAGGGGCATTCGTCGCCGGAGTATTCTGTGCGGTGGCGACG
GGATACCTGAAAGACAACAGCCGAATCAAGCAAGATACAGTGATGGGGATTGTTTTTTCTGGCATGTTTGCCGCAGGTCT
GATCTTGTATATTGCAGTCAAACCAGACGTACATCTTGATCATATTCTTTTCGGCGACATGCTCGGGATAACCATCGGCG
ATATAATCCAGACGGTGATTATTGCCGGACTGGTTACACTTGTTATTAGCGTAAAATGGCGGGATTTTTTGCTGTTCAGC
TTTGATTATCAACAGGCGCAGGCAAGCGGTTTGCATACGAGATGGCTGCATTATGGGCTGCTGTGCATGGTCTCCCTGAC
CATTGTGGCGACGCTGAAAGCGGTAGGTATCATTCTCTCTATTTCTCTTCTCATTGCGCCTGGTGCCATTGCGGTACTCC
TGACACAACGCTTTCATATTGCGCTCCTGCTGGCAACTGGCATATCGATATTGGTCTCAATGACTGGTGTCTGGCTGTCC
TTTTTTATCGACAGCGCGTCAGCTCCGACAATTGTTGTCTTATTCGCGGTCATGTTCATCATGACGTTTACCGTTACCAG
CATCAACGCACGCACAAAGGAAAATGCCGAACCACGGGATTTGTTATCATCCGATTAG

Protein sequence : 
MMALLLEPLQFTFMSHALLISLVVSIPCALLSVFLVLKSWALMGDAMSHAVFPGIVLAWILGLPLATGAFVAGVFCAVAT
GYLKDNSRIKQDTVMGIVFSGMFAAGLILYIAVKPDVHLDHILFGDMLGITIGDIIQTVIIAGLVTLVISVKWRDFLLFS
FDYQQAQASGLHTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTQRFHIALLLATGISILVSMTGVWLS
FFIDSASAPTIVVLFAVMFIMTFTVTSINARTKENAEPRDLLSSD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-75 67
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-75 67
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-75 67
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-75 67
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-75 67

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD_1 YP_001739969.1 iron/manganese transport system membrane protein SitD BAC0352 Protein 1e-75 67
sitD_1 YP_001739969.1 iron/manganese transport system membrane protein SitD BAC0442 Protein 1e-55 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD_1 YP_001739969.1 iron/manganese transport system membrane protein SitD VFG0528 Protein 1e-75 67