|
Name : lysS (SYNPCC7002_A0035) Accession : YP_001733308.1 Strain : Synechococcus sp. PCC 7002 Genome accession: NC_010475 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 31804 - 33420 bp Length : 1617 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCTGAGTCTAGCCATTCCTCCCTCGATGACATTCGCGCTACCCGATTAGAAAAGGTTGATCAACTCAAGGCGATCGC CATGAATCCCTACGCCTACAAATGGGAGATCAGCCACCACACCGCCGAACTACAGGAAAAATATAAAGACATCGAAGCTG GAGAAGAAGTCGAAGACACCGTATCCATTGCTGGGAGAATTCTCGCCCGTCGTGTCTTCGGTAAACTTGCGTTTTTTAGC CTCCAGGACGAAACTGGCACGATCCAGCTTTACCTCGATAAGAAATTAATTAATGGCGGAATGCCCGACCTCGAAGGCGC ATTCAACCACCTCAAAAAACTCACCGACGTCGGCGATATTATTGGTGTCAAAGGTATTATCAAGCGCACCGAAAAAGGGG AACTCTCCATTAAAGTGAGCCAATTTGCCATGCTCACCAAATCCCTGCTGCCTCTCCCGGACAAATGGCATGGCCTCACC GACATCGAAAAACGCTACCGTCAGCGTTACGTTGATCTGATTATTAACCCCCAAGTAAAAGAGACATTCCGCCGTCGCGC CAAAATTACTGCCGCCATCCGCCGTTATCTTGAAGACCGCGATTTCCTTGAAATTGAAACTCCCGTCCTCCAAGCTGAAG CTGGCGGCGCAGAAGCCCGTCCTTTCATTACCCACCACAACACCCTTGATATGCCGCTCTATCTGCGGATCGCCACGGAA TTACACCTGAAGCGCTTGGTCGTCGGTGGCTTTGAGCGGGTCTTTGAACTGGGGCGCATCTTCCGTAATGAGGGCGTTTC CACTAAGCACAACCCCGAATTTACCTCCATCGAAGTCTACCAAGCCTATGGTGACTATTTCGACATGATGGATCTCACAG AAGATCTAATTCGTACCCTTGCGAAGGACATCGTCGGTCAAGCTCAACTGCCCTATGGTGAGGTGATCGTTGATGTGGGT ACTCCCTGGCGCCGGGAAACCATGCAAAACCTCGTTCAGGAAGCCACAGGGATCAATTTCCTCAGCTTTGATGACCTTAA CGCCGCAAAGCAAGCCGCTGAATCTGTAGGAATGCACATTCCCGAAAAATGTAAAACCATCGGGCAATTACTGAATGAAG CCTTCGAGCAAAAGGTAGAAGCAACTTTAATTCAGCCCACTTTTGTGACGGAATATCCTGTGGAAGTGTCTCCCCTCGCC AAGCCCCACCGCGATAAACCGGGTTTAACGGAGCGTTTTGAATTGTTTATTGTGGGCCGAGAACTTGCCAATGGTTTCTC TGAGTTAACGGATCCCGTCGATCAACGGCAACGGTTGGAAGAACAAGCGGCCAAGAAAGCAGCGGGGGACGAGGAAGCCT GTGATGTGGATGAGGATTTTGTCACAGCACTGGAATACGGCATGCCTCCCACGGTTGGTCTAGGAATTGGGATTGATCGC CTAGTGATGTTGTTGACTAATGCCGAAAGTATCCGCGATGTGATTGCTTTCCCACTGCTTAAGGATCGTTTTCGTGGAAT ACGAGATGAGACGCTTTCTGGTGATAGGGGCCTCAAACTCTCTGACATCGCTGAAGATAAGAAACTTCCTCAGGTTTCTG ACCTTGGTGAAATGTAA Protein sequence : MSESSHSSLDDIRATRLEKVDQLKAIAMNPYAYKWEISHHTAELQEKYKDIEAGEEVEDTVSIAGRILARRVFGKLAFFS LQDETGTIQLYLDKKLINGGMPDLEGAFNHLKKLTDVGDIIGVKGIIKRTEKGELSIKVSQFAMLTKSLLPLPDKWHGLT DIEKRYRQRYVDLIINPQVKETFRRRAKITAAIRRYLEDRDFLEIETPVLQAEAGGAEARPFITHHNTLDMPLYLRIATE LHLKRLVVGGFERVFELGRIFRNEGVSTKHNPEFTSIEVYQAYGDYFDMMDLTEDLIRTLAKDIVGQAQLPYGEVIVDVG TPWRRETMQNLVQEATGINFLSFDDLNAAKQAAESVGMHIPEKCKTIGQLLNEAFEQKVEATLIQPTFVTEYPVEVSPLA KPHRDKPGLTERFELFIVGRELANGFSELTDPVDQRQRLEEQAAKKAAGDEEACDVDEDFVTALEYGMPPTVGLGIGIDR LVMLLTNAESIRDVIAFPLLKDRFRGIRDETLSGDRGLKLSDIAEDKKLPQVSDLGEM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 7e-103 | 48 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 3e-78 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001733308.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 4e-103 | 48 |
