|
Name : clpB1 (SYNPCC7002_A2353) Accession : YP_001735586.1 Strain : Synechococcus sp. PCC 7002 Genome accession: NC_010475 Putative virulence/resistance : Virulence Product : endopeptidase Clp ATP-binding subunit B1 Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 2432148 - 2434742 bp Length : 2595 bp Strand : - Note : similar to slr1641 of Synechocystis sp. strain PCC 6803 DNA sequence : ATGCAACCCACTAACCCGAATCAATTTACCGAAAAAGCCTGGCAGGCGATCGCCCAAACGCCGGACATTGCCAAACAAAA TCAGCAGCAGCAGATCGAATCTGAACATCTGCTACAGGCACTGTTAGAGCAAGACGGCCTCGCGAAAAGTATTTTTACCA AAGCGGAGATTCCCCTCTCAACATTGCGAGACCGCACCGCAACCTTTATTGCCCAGCAACCGAAAATATCCCAACCGAGC GAATCGGTTTATTTAGGCCGGAGTTTAGACCTCCTTTTAGACCGCGCCGATCAACACCGAAAATCCTTTGGGGATGACTT TATTTCCGTTGAACATTTAATCTTGAGCTATGCCAAAGATGACCGTTTTGGCAAAAATCTCTACAAAGAATTTGACCTCA CAGAAAATAAATTAAAGACGATCATTACGCAAATTCGAGGTAATCAAAAGGTGACCGACCAAAACCCGGAAGGGAAATAC GAATCCTTAGAAAAATATGGCCGTGATTTAACGAGTCTCGCCCGCAACGGCAAACTAGACCCGGTCATTGGTCGCGATGA TGAAATTCGCCGCACGATTCAAATTCTCTCCCGCCGCACGAAAAATAATCCGGTTTTGATCGGGGAACCAGGGGTCGGGA AAACGGCGATCGCCGAAGGATTAGCCCAGCGGATCGTTAACCGTGATGTCCCCGAATCCCTAAAAGATCGCACCCTAATC GCCTTGGATATGGGGTCGCTCATTGCTGGGGCAAAATATCGTGGTGAATTTGAAGAACGCCTCAAAGCTGTTTTAAAAGA AGTCACCGATTCCGAAGGGCAGATCATTCTCTTTATTGACGAAATCCACACCGTTGTCGGCGCTGGGGCGACCCAGGGGG CAATGGATGCCGGGAACCTGCTTAAACCCATGCTCGCCCGGGGTGAACTGCGTTGTATTGGCGCGACGACCCTCGATGAA TACCGTAAATACATCGAAAAAGATGCGGCCCTAGAACGGCGCTTCCAGTCGGTGATGGTCAACGAACCCAATGTGGTCGA TACCATCTCGATTCTGCGGGGTCTGAAGGAACGCTACGAAGTGCACCACGGGGTCAAAATCGCCGATACAGCCCTCGTTG CTGCCGCGATGCTCTCCAACCGTTACATTAGCGATCGCTTTTTACCGGACAAGGCCATTGATCTGGTGGACGAAGCCGCC GCCAAACTGAAGATGGAGATCACCTCCAAGCCAGAAGAACTGGATGAAATTGACCGGAAAATTCTCCAGTTGGAAATGGA AAAACTCTCCATCCAAAAGGAAAAAGATGAAGTTTCCCTTGAGCGACTCGCCAAGCTGGAAAAAGAACTGGCCAATTTTA AGGAAGAGCAGTCCCAACTCAACGCCCAGTGGCAATCGGAAAAAGAATTTATCGACAAAATTCGCTTTCTTAAGGAGGAA ATCGATAAAACCAACCTAGAAATTCAACAGGCCGAACGCAATTATGACCTCAATAAGGCGGCAGAGTTGCGCTACGGGAA GTTGACGGAACTGCAACAAAAAATCAAAGATATCGAGAGCAATCTCGCGGCCCAACAGGTAACTGGAGAATCTCTGCTAC GGGAAGAAGTGATCGAGTCGGATATCGCTGAAATCATTTCAAAATGGACAGGTATCCCGATTAGTAAATTAATCGAATCG GAAAAAGAAAAGCTGCTCCACCTCGAAGCAGAACTCCACCGTCGGGTTGTCGGCCAAGAAGAAGCCGTTACCGCCGTTGC CGAAGCGATCCAGCGATCGCGCGCCGGACTCGCCGATCCCAACCGTCCTACGGCGAGCTTTATTTTCCTGGGGCCGACGG GGGTCGGGAAAACAGAACTCGCCAAAGCCCTCGCCCAATTTCTCTTTGATACCGAAGAAGCCCTCGTGCGGATCGATATG TCCGAATACATGGAGAAACACGCCGTTTCCCGTTTAATGGGAGCGCCTCCAGGCTATGTGGGCTATGAAGAAGGGGGCCA GTTAACGGAAGCAATTCGCCGCCGTCCCTACTCGGTGATTCTCTTTGATGAAATTGAAAAGGCCCACGCCGATGTGTTTA ATGTGATGCTGCAAATCCTGGATGATGGCCGTTTGACCGATTCCCAGGGGCGGACAGTGGACTTTAAAAACACGGTGATC ATCATGACCAGTAATATCGGTTCCCAATTTATTCTCGATATTGCCGGGGATGATGCCCGTTACGAGGAAATGCGCAATCG GGTAATGGAGGCGATGAATGCGAACTTCCGGCCGGAATTTCTCAACCGCATCGATGAACTGATTATTTTCCATGGTCTAC AAAAAGATCAACTGCGTTCTATTGTTCAACTTCAGGTGAATCGCCTCGCCGAACGCCTCGCGGAACAGAAGATCAGCATT CAACTCACCCCAGAAGCCTATGATTTCATTGCTGAGGTGGGTTATAACCCGGTCTATGGTGCGAGACCCCTCAAGCGGGC CGTCCAGAAATATGTCGAAACGGCGATCGCCAAAGGGATCCTCAAGGGTGAATTTAAAGCAGGCAGTGCCATTACAGTCG ATGTGAAAGATGAACGTTTGACTTTTCGTATTTAA Protein sequence : MQPTNPNQFTEKAWQAIAQTPDIAKQNQQQQIESEHLLQALLEQDGLAKSIFTKAEIPLSTLRDRTATFIAQQPKISQPS ESVYLGRSLDLLLDRADQHRKSFGDDFISVEHLILSYAKDDRFGKNLYKEFDLTENKLKTIITQIRGNQKVTDQNPEGKY ESLEKYGRDLTSLARNGKLDPVIGRDDEIRRTIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIVNRDVPESLKDRTLI ALDMGSLIAGAKYRGEFEERLKAVLKEVTDSEGQIILFIDEIHTVVGAGATQGAMDAGNLLKPMLARGELRCIGATTLDE YRKYIEKDAALERRFQSVMVNEPNVVDTISILRGLKERYEVHHGVKIADTALVAAAMLSNRYISDRFLPDKAIDLVDEAA AKLKMEITSKPEELDEIDRKILQLEMEKLSIQKEKDEVSLERLAKLEKELANFKEEQSQLNAQWQSEKEFIDKIRFLKEE IDKTNLEIQQAERNYDLNKAAELRYGKLTELQQKIKDIESNLAAQQVTGESLLREEVIESDIAEIISKWTGIPISKLIES EKEKLLHLEAELHRRVVGQEEAVTAVAEAIQRSRAGLADPNRPTASFIFLGPTGVGKTELAKALAQFLFDTEEALVRIDM SEYMEKHAVSRLMGAPPGYVGYEEGGQLTEAIRRRPYSVILFDEIEKAHADVFNVMLQILDDGRLTDSQGRTVDFKNTVI IMTSNIGSQFILDIAGDDARYEEMRNRVMEAMNANFRPEFLNRIDELIIFHGLQKDQLRSIVQLQVNRLAERLAEQKISI QLTPEAYDFIAEVGYNPVYGARPLKRAVQKYVETAIAKGILKGEFKAGSAITVDVKDERLTFRI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 4e-101 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 3e-101 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB1 | YP_001735586.1 | endopeptidase Clp ATP-binding subunit B1 | VFG2076 | Protein | 2e-114 | 43 |
| clpB1 | YP_001735586.1 | endopeptidase Clp ATP-binding subunit B1 | VFG2084 | Protein | 4e-104 | 43 |
