Gene Information

Name : SYNPCC7002_A1733 (SYNPCC7002_A1733)
Accession : YP_001734978.1
Strain : Synechococcus sp. PCC 7002
Genome accession: NC_010475
Putative virulence/resistance : Virulence
Product : ABC 3 transport family protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1819974 - 1820837 bp
Length : 864 bp
Strand : -
Note : similar to sll1600 of Synechocystis sp. PCC 6803

DNA sequence : 
ATGAGCTTAGTGAATTGGATTATTGAACCCCTACAGTACGGATTTCTCGTCAAAGCCATTTGGGTAAGTGCCTTTGTCGG
CCTCGTCTGTGCGGTGTTGTCCTGCTATATCACCCTCAAGGGTTGGTCACTGATGGGGGATGCTGTTTCCCATGCCGTCG
TTCCAGGAGTCGTGGTGGCCTATGCCCTAAATATTCCCTTTGCCATTGGCGCCTTCATCTTTGGTTTTGGCGCAACTGTG
GCCATTGGTTATGTAAAGTCAAAAACAAGGCTCAAAGAAGATGCTGTCATTGGGGTGATTTTCACCGGGTTCTTTGCCTC
TGGCTTGGTCTTAATTACGAAAATCCCCAGTAATATCGATCTTTTCCATATTCTGTTTGGCAACGTTCTTGGGATCTCCA
ACAGTGATATTGTGCAAACCTTGATCGCCGGCACCCTGACCTTGGTAGTGATCCTCATTCAACGGAAGGATCTGTTACTT
TTTTGCTTTGACCCAAATCACGCTAAAGCCATCGGCCTGAATACTCGACTGATGTATTACACGCTTTTGTCTGTACTGGC
GTTGACCATTGTGACGGCCCTACAAACAGCGGGCATTATTCTCGTCATTGCGATGCTCGTGACCCCAGGCTCCATCGCCT
ATCTACTGACAGACCGCTTCGACCATATGCTGTGGATTTCTGCGGCGAGCAGCATTTTTTCCTGTGTTTTCGGCACCTAT
TTGAGCTATCACTTCGATGTTTCGACGGGGGGGGCGATCGTGGTTTTACTGACGATTGTCTTTGTGTTGGCGATGTTTTT
TGCGCCGAAGTATGGCATTTTAAGCCAGGGCAAGTCCTCGATACCGTTGGAATCTTCGCCATAG

Protein sequence : 
MSLVNWIIEPLQYGFLVKAIWVSAFVGLVCAVLSCYITLKGWSLMGDAVSHAVVPGVVVAYALNIPFAIGAFIFGFGATV
AIGYVKSKTRLKEDAVIGVIFTGFFASGLVLITKIPSNIDLFHILFGNVLGISNSDIVQTLIAGTLTLVVILIQRKDLLL
FCFDPNHAKAIGLNTRLMYYTLLSVLALTIVTALQTAGIILVIAMLVTPGSIAYLLTDRFDHMLWISAASSIFSCVFGTY
LSYHFDVSTGGAIVVLLTIVFVLAMFFAPKYGILSQGKSSIPLESSP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-42 48
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 5e-43 48
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-42 48
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-42 48
sitD NP_461785.1 permease Virulence SPI-1 Protein 6e-43 48
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-47 46
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-47 46
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-47 46
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-47 46
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-47 46
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 1e-31 41
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 7e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SYNPCC7002_A1733 YP_001734978.1 ABC 3 transport family protein BAC0441 Protein 1e-45 51
SYNPCC7002_A1733 YP_001734978.1 ABC 3 transport family protein BAC0442 Protein 2e-52 49
SYNPCC7002_A1733 YP_001734978.1 ABC 3 transport family protein BAC0352 Protein 3e-43 48
SYNPCC7002_A1733 YP_001734978.1 ABC 3 transport family protein BAC0351 Protein 6e-48 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SYNPCC7002_A1733 YP_001734978.1 ABC 3 transport family protein VFG0528 Protein 3e-43 48
SYNPCC7002_A1733 YP_001734978.1 ABC 3 transport family protein VFG0527 Protein 6e-48 46