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Name : clpC (SYNPCC7002_A0141) Accession : YP_001733411.1 Strain : Synechococcus sp. PCC 7002 Genome accession: NC_010475 Putative virulence/resistance : Virulence Product : endopeptidase Clp, ATP-binding subunit C Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 139947 - 142412 bp Length : 2466 bp Strand : - Note : similar to sll0020 of Synechocystis sp. PCC 6803 DNA sequence : ATGTTTGAACGCTTCACAGAAAAAGCTATTAAGGTGATTATGCTCGCCCAAGAGGAAGCGCGTCGCCTTGGTCATAACTT CGTTGGTACGGAGCAAATCCTCCTCGGTCTCATTGGTGAGGGGACTGGCGTTGCCGCTAAGGTACTCCGGTCTATGGGGG TTAATCTCAAGGATGCCCGCATTGAGGTAGAGAAAATTATTGGACGGGGTTCTGGCTTTGTGGCCGTTGAAATTCCGTTC ACGCCCAGGGCAAAACGAGTTTTAGAACTCTCCCTCGAAGAAGCTCGCCAATTAGGTCATAACTATATTGGTACGGAGCA TTTGTTACTAGGCTTAATCCGTGAAGGGGAAGGAGTTGCTGCCAGAGTCCTCGAAAATTTAGGGGTTGACCTCTCCAAGG TGCGTACCCAAGTAATCCGGATGCTCGGTGAGACCGCAGAAGTCGCAGCGGGTGGCGGTTCTTCCCGGAGTAATAAGACA CCGACCCTAGATGAATTTGGCTCAAATCTGACCCAACTGGCAAAAGATGGCAAACTTGATCCCGTCGTTGGTCGTCAAAA TGAAATTGAACGGGTGATTCAAATCCTCGGGCGCCGCACGAAAAATAATCCGGTACTGATTGGCGAACCAGGGGTCGGGA AAACGGCGATCGCCGAAGGTCTTGCCCAAAGAATTTCCAATGGGGATGTACCTGACATCCTCGAAGAAAAGCGCGTTGTC ACCCTCGACATTGGTTTGCTGGTTGCGGGCACGAAATACCGGGGTGAATTTGAAGAACGCCTCAAAAAAATCATGGACGA AATTCGCCAAGCCGGGAATGTGATCCTGGTGATTGACGAAGTCCATACCCTAATCGGTGCGGGTGCTGCGGAAGGGGCGA TCGATGCCGCCAATATCCTCAAGCCTGCCCTCGCCCGTGGTGAACTGCAATGTATCGGTGCCACCACCCTTGATGAATAT CGCAAACACATCGAGCGGGATGCGGCCCTTGAGCGGCGTTTCCAGCCCGTCATGGTCGGTGAACCCTCAGTCGAAGAAAC TATTGAGATTCTCTTTGGTCTGCGGGAACGCTATGAACAGCACCACAAGCTGAAAATTTTGGATGAAGCCCTCGATGCAG CGGCAAAATTAGCCGACCGTTACATCAGCGATCGCTTCTTGCCCGACAAAGCCATTGACTTAATCGATGAAGCGGGTTCC CGTGTTCGGTTGATCAATTCCCAACTGCCCCCCGAAGCGAAGGAACTCGATAAAGAATTGCGCGATGTCCTAAAGCAGAA GGATGAAGCGGTGCGCTCCCAAGACTTCGATAAAGCGGGTGAATTGCGCGATCGCGAAATGGAAATCAAAACCGAAATTC GGGCGATCGCCGCCAGCCAAAAAGAGAAAAATAGTGACATCGATGCCGTGGTTGATGCTGAAGAAATCGCCCACATCGTC GCCTCTTGGACAGGGGTTCCCCTCAACAAACTTACCGAGAGCGAATCCACCAAGCTTCTCAACATGGAAGACACCCTGCA CCAGCGTCTCATTGGTCAGGAAGATGCCGTTAAAGCTGTATCTCGCGCCATTCGTCGGGCCCGTGTTGGCTTGAAAAACC CCAACCGTCCCATCGCCAGCTTTGTCTTCTCTGGCCCCACTGGGGTTGGTAAAACCGAATTAACCAAGGCTTTAGCTGCC TACTTCTTCGGTTCTGAAGATGCGATGATTCGCCTCGACATGTCTGAATTCATGGAACGGCACACTGTTTCTAAACTGAT TGGTTCCCCTCCCGGATACGTCGGTTATAACGAAGGGGGTCAGTTAACCGAAGCCGTCCGTCGTCGTCCTTACACCGTTA TTCTCTTTGACGAAATCGAGAAAGCCCACCCCGACATCTTCAACATGCTGCTGCAAATCCTTGAAGATGGACGCTTGACC GACGCGAAGGGGCGCACCGTGGACTTCAAGAACACCTTGATTATCCTGACCTCCAACATTGGCTCTAAGGTCATTGAGAA AGGTGGCGGTGGCCTCGGCTTCGAATTTGGCGAAGATGCGGCAGAATCCCAGTACAACCGGATCCGTTCCCTAGTCAACG AAGAACTCAAGCAATACTTCAGACCTGAATTCCTCAACCGTCTCGATGAGATTATTGTCTTCCGTCAACTTAACAAAGAA GAGGTTAAAGAAATCTCCGAAATCCTCCTTAAGGACGTCTTCAAGCGCCTGACTGAGCAGGAAATTGAGCTGCAAGTTAC CGACAAGTTTAAGGAGCGACTCGTGGAAGAAGGCTACAACCCATCCTATGGTGCCCGTCCGTTACGTCGCGCGATTATGC GCCTGTTAGAGGATGTCCTTGCTGAGGAAATTCTTTCTGGCCGCGTTGGTTCTGGTGATACGGCGATCGTCGACATCAAT GAAGAAGGTAAAGTGGCCGTCAGTAAAGCGGCAAAACCTTTGGAATTAGCCAAGCAACCTGGTTAA Protein sequence : MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLRSMGVNLKDARIEVEKIIGRGSGFVAVEIPF TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVAAGGGSSRSNKT PTLDEFGSNLTQLAKDGKLDPVVGRQNEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRISNGDVPDILEEKRVV TLDIGLLVAGTKYRGEFEERLKKIMDEIRQAGNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEY RKHIERDAALERRFQPVMVGEPSVEETIEILFGLRERYEQHHKLKILDEALDAAAKLADRYISDRFLPDKAIDLIDEAGS RVRLINSQLPPEAKELDKELRDVLKQKDEAVRSQDFDKAGELRDREMEIKTEIRAIAASQKEKNSDIDAVVDAEEIAHIV ASWTGVPLNKLTESESTKLLNMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSGPTGVGKTELTKALAA YFFGSEDAMIRLDMSEFMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVILFDEIEKAHPDIFNMLLQILEDGRLT DAKGRTVDFKNTLIILTSNIGSKVIEKGGGGLGFEFGEDAAESQYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQLNKE EVKEISEILLKDVFKRLTEQEIELQVTDKFKERLVEEGYNPSYGARPLRRAIMRLLEDVLAEEILSGRVGSGDTAIVDIN EEGKVAVSKAAKPLELAKQPG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_001733411.1 | endopeptidase Clp, ATP-binding subunit C | VFG0079 | Protein | 0.0 | 60 |
| clpC | YP_001733411.1 | endopeptidase Clp, ATP-binding subunit C | VFG0080 | Protein | 6e-150 | 53 |
