Gene Information

Name : rrp3 (LCK_00401)
Accession : YP_001727678.1
Strain : Leuconostoc citreum KM20
Genome accession: NC_010471
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 418274 - 418963 bp
Length : 690 bp
Strand : +
Note : COG0745TK

DNA sequence : 
ATGAGTAAAGTATTAATTGTTGAAGATGAAGAAAACTTGGCAAAGTTTATCGGTCTTGAACTCAAACACGAGGGTTATGA
AGTTGAAACTGTTTTGGACGGGCGTTCTGGGCTTGATTCAGCATTGGAAAATAATTACGATGTCATCTTGCTTGATTTGA
TGTTGCCTGAACTAAATGGGCTTGAAGTAGCACGTCGCTTGCGTGAATCAAAGAAAACGCCAATTATTATGATGACAGCG
CGTGATTCAGTCATTGATCGTGTATCAGGTTTGGATTATGGGGCGGATGACTATTTGGTAAAACCCTTTGCTATTGAAGA
ATTGCTAGCACGTATTCGCTCATTATTGCGTCGTATTGCAATTGAGACAGAGTCGAGTGATAAGCATCGTGCTATCATTA
ATTTTAAGGACTTACGTATTGAAAAAGAAAATCGCATTGCACGTCGTGATGATCAAATTATCAATTTGACTAAGCGTGAA
TATGATTTGTTGCTTACTTTAGTTGAGAATATTAATGTGGTGCAATCACGTGAGCAATTGTTGAAAGAAGTTTGGGGATT
TGATTCCGAAGTTGAAACCAACGTTGTTGATGTTTATATTCGATATTTGCGTAATAAGATTGATGATCCAGAAAGTAAGG
CCTCATATATTCAGACGGTACGTGGTACTGGATATGTTATGCGTAGCTGA

Protein sequence : 
MSKVLIVEDEENLAKFIGLELKHEGYEVETVLDGRSGLDSALENNYDVILLDLMLPELNGLEVARRLRESKKTPIIMMTA
RDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAIETESSDKHRAIINFKDLRIEKENRIARRDDQIINLTKRE
YDLLLTLVENINVVQSREQLLKEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-32 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rrp3 YP_001727678.1 response regulator HE999704.1.gene1528. Protein 5e-66 67
rrp3 YP_001727678.1 response regulator NC_013450.8614146.p0 Protein 1e-49 55
rrp3 YP_001727678.1 response regulator NC_002951.3238224.p0 Protein 1e-49 55
rrp3 YP_001727678.1 response regulator NC_007793.3914065.p0 Protein 1e-49 55
rrp3 YP_001727678.1 response regulator NC_002758.1121390.p0 Protein 1e-49 55
rrp3 YP_001727678.1 response regulator NC_010079.5776364.p0 Protein 1e-49 55
rrp3 YP_001727678.1 response regulator NC_002952.2859858.p0 Protein 1e-49 55
rrp3 YP_001727678.1 response regulator NC_007622.3794948.p0 Protein 1e-49 55
rrp3 YP_001727678.1 response regulator NC_003923.1003417.p0 Protein 1e-49 55
rrp3 YP_001727678.1 response regulator AE015929.1.gene1106. Protein 6e-45 54
rrp3 YP_001727678.1 response regulator NC_012469.1.7686381. Protein 7e-35 42
rrp3 YP_001727678.1 response regulator BAC0125 Protein 1e-30 41
rrp3 YP_001727678.1 response regulator NC_012469.1.7685629. Protein 2e-38 41
rrp3 YP_001727678.1 response regulator HE999704.1.gene2815. Protein 1e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rrp3 YP_001727678.1 response regulator VFG1389 Protein 1e-32 46
rrp3 YP_001727678.1 response regulator VFG1390 Protein 1e-33 44
rrp3 YP_001727678.1 response regulator VFG0596 Protein 2e-32 42