Gene Information

Name : rrp1 (LCK_00185)
Accession : YP_001727462.1
Strain : Leuconostoc citreum KM20
Genome accession: NC_010471
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 190604 - 191311 bp
Length : 708 bp
Strand : +
Note : COG0745TK

DNA sequence :
ATGAGTAAAATTTTGGTTGTGGATGACGAGAAGCCAATCTCGGATATCATCAAGTTTAATTTAACAAAAGAAGGCTACGA
TGTAATTACAGCCGCCGATGGTCAAGAAGCTTTAGCACTTTTTAACGATGAAAAACCTGATCTTGTGTTACTGGATCAGA
TGTTACCAGAGATTGATGGTGTTGAAGTCTTGAGACAAATTCGTTCTAAATCAGAAACACCAGTAATCATGGTAACTGCA
AAAGACTCTGAAATTGATAAAGTTTTAGGCTTAGAAATGGGTGCTGATGATTACGTTACAAAACCTTTTTCTAATCGTGA
GTTAGTGGCGCGTGTTAAGGCTAATTTGCGTAGCCGTAAGGCCGTTTCCCAACATAGTGAAGAGGCAACTGTTCATAATG
AAGACATTGCGCTGGGTGATTTAACTATCCATCCGCAAGCTTATATGGTGTCTAAGGCAGGCCAAGATATTGAATTAACT
CATCGTGAGTTTGAATTACTCTATTACTTAGCACAACATATTGGGCAAGTCATGACCCGTGAGCATCTTTTACAGCAAGT
CTGGGGCTATGATTATTTTGGCGATGTGCGAACTGTTGATGTTACGGTTCGTCGTCTACGTGAAAAAATAGAAGACAATC
CTAGTCATCCAAATTGGTTGGCTACACGTCGTGGTGTTGGTTACTATCTAAGGCCCGACGCTGAATAA

Protein sequence :
MSKILVVDDEKPISDIIKFNLTKEGYDVITAADGQEALALFNDEKPDLVLLDQMLPEIDGVEVLRQIRSKSETPVIMVTA
KDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKAVSQHSEEATVHNEDIALGDLTIHPQAYMVSKAGQDIELT
HREFELLYYLAQHIGQVMTREHLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPDAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-33 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-33 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rrp1 YP_001727462.1 response regulator NC_012469.1.7685629. Protein 2e-69 67
rrp1 YP_001727462.1 response regulator NC_002952.2859905.p0 Protein 8e-48 51
rrp1 YP_001727462.1 response regulator HE999704.1.gene2815. Protein 4e-48 51
rrp1 YP_001727462.1 response regulator NC_009782.5559369.p0 Protein 1e-47 50
rrp1 YP_001727462.1 response regulator NC_002951.3237708.p0 Protein 1e-47 50
rrp1 YP_001727462.1 response regulator NC_003923.1003749.p0 Protein 9e-48 50
rrp1 YP_001727462.1 response regulator NC_002758.1121668.p0 Protein 1e-47 50
rrp1 YP_001727462.1 response regulator NC_007622.3794472.p0 Protein 6e-48 50
rrp1 YP_001727462.1 response regulator NC_009641.5332272.p0 Protein 1e-47 50
rrp1 YP_001727462.1 response regulator NC_013450.8614421.p0 Protein 1e-47 50
rrp1 YP_001727462.1 response regulator NC_007793.3914279.p0 Protein 1e-47 50
rrp1 YP_001727462.1 response regulator NC_002745.1124361.p0 Protein 1e-47 50
rrp1 YP_001727462.1 response regulator NC_012469.1.7686381. Protein 1e-43 48
rrp1 YP_001727462.1 response regulator NC_002695.1.915041.p Protein 8e-34 45
rrp1 YP_001727462.1 response regulator CP000034.1.gene3834. Protein 8e-34 45
rrp1 YP_001727462.1 response regulator AE016830.1.gene1681. Protein 4e-44 45
rrp1 YP_001727462.1 response regulator CP001138.1.gene4273. Protein 1e-33 44
rrp1 YP_001727462.1 response regulator BAC0533 Protein 5e-34 44
rrp1 YP_001727462.1 response regulator CP004022.1.gene3215. Protein 3e-38 44
rrp1 YP_001727462.1 response regulator CP000647.1.gene4257. Protein 5e-34 44
rrp1 YP_001727462.1 response regulator CP001918.1.gene5135. Protein 3e-29 44
rrp1 YP_001727462.1 response regulator AF155139.2.orf0.gene Protein 9e-38 44
rrp1 YP_001727462.1 response regulator AF162694.1.orf4.gene Protein 3e-33 43
rrp1 YP_001727462.1 response regulator FJ349556.1.orf0.gene Protein 6e-38 43
rrp1 YP_001727462.1 response regulator AE000516.2.gene3505. Protein 3e-35 43
rrp1 YP_001727462.1 response regulator HE999704.1.gene1528. Protein 9e-32 42
rrp1 YP_001727462.1 response regulator AM180355.1.gene1830. Protein 2e-36 42
rrp1 YP_001727462.1 response regulator NC_010079.5776364.p0 Protein 8e-35 42
rrp1 YP_001727462.1 response regulator NC_002952.2859858.p0 Protein 8e-35 42
rrp1 YP_001727462.1 response regulator NC_007622.3794948.p0 Protein 8e-35 42
rrp1 YP_001727462.1 response regulator NC_003923.1003417.p0 Protein 8e-35 42
rrp1 YP_001727462.1 response regulator NC_013450.8614146.p0 Protein 8e-35 42
rrp1 YP_001727462.1 response regulator NC_002951.3238224.p0 Protein 8e-35 42
rrp1 YP_001727462.1 response regulator NC_007793.3914065.p0 Protein 8e-35 42
rrp1 YP_001727462.1 response regulator NC_002758.1121390.p0 Protein 8e-35 42
rrp1 YP_001727462.1 response regulator AF130997.1.orf0.gene Protein 1e-32 41
rrp1 YP_001727462.1 response regulator AE015929.1.gene1106. Protein 5e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rrp1 YP_001727462.1 response regulator VFG1389 Protein 1e-31 44
rrp1 YP_001727462.1 response regulator VFG1563 Protein 1e-33 42
rrp1 YP_001727462.1 response regulator VFG1702 Protein 1e-33 42
rrp1 YP_001727462.1 response regulator VFG1386 Protein 2e-32 41