Gene Information

Name : EcolC_0860 (EcolC_0860)
Accession : YP_001723856.1
Strain : Escherichia coli ATCC 8739
Genome accession: NC_010468
Putative virulence/resistance : Virulence
Product : lytic transglycosylase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 926054 - 926428 bp
Length : 375 bp
Strand : -
Note : PFAM: Lytic transglycosylase catalytic; KEGG: stt:t4248 hypothetical protein

DNA sequence : 
ATGTTCAGAATCGAACCAAATTTAATTAAAGCTATCGCTCTTGTTGAAAGCAATCTAAAAAAGGATAGCATAGGCAAGAA
CAGAGATAAGAATAACAATATAAAGAGTTTAGATTATGGGTTAATGCAGATAAACCAGATGCATATTCCCCTGTTAAAAA
AATGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATAT
AACCATTTTTCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAA
GAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAG

Protein sequence : 
MFRIEPNLIKAIALVESNLKKDSIGKNRDKNNNIKSLDYGLMQINQMHIPLLKKCGIIKDERDLLDNPCLNIKIGTEILY
NHFSRCGVTWQCLGTYNAGFAMDNQKKRQQYAPKYILYIPGLMN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECs3711 NP_311738.1 hypothetical protein Not tested LIM Protein 2e-46 91
pilT AAC98888.1 PilT Virulence SPI-7 Protein 5e-25 52
pilT NP_458636.1 putative membrane protein Virulence SPI-7 Protein 8e-25 52
pilT NP_807847.1 hypothetical protein Virulence SPI-7 Protein 8e-25 52
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 3e-14 42
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 3e-14 42
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 2e-14 42
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 2e-14 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcolC_0860 YP_001723856.1 lytic transglycosylase VFG0539 Protein 9e-15 42