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Name : EcolC_0848 (EcolC_0848) Accession : YP_001723847.1 Strain : Escherichia coli ATCC 8739 Genome accession: NC_010468 Putative virulence/resistance : Virulence Product : type III secretion protein SpaR/YscT/HrcT Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4791 EC number : - Position : 917613 - 918380 bp Length : 768 bp Strand : + Note : TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: cvi:CV_2622 surface presentation of antigens; secretory proteins DNA sequence : ATGGGGGAGGCGATACTCTATCAGTTGCATAGTCTGCTGGCTGCTACAGCGCTCGGTTTTTGCCGATTGGCACCAACTTT CTATTTGTTACCATTTTTCGCCAGTGGGAATATACCAACAGTAGTCCGTCATCCAATAATAATAGTGGTATCATGTGCAT TAGTTCAGCATTACCACTATGAATTATCGACCTTAAATGAAATCGATATCGCTTTGTTTGCTGCCAGAGAAATTATCATA GGGCTGTTCATTGCTTGCTTATTATCATCCCCGTTTTGGATTTTCCTTGCTATAGGTAGTTTTATCGATAACCAACGTGG TGCAACGTTAAGTAGTACTTTGGATCCTGCTACAGGTGTCGATACTTCGGAATTAGCAAGATTATTTAATCTATTCTCTG CAGCGGTTTATCTTACTAACGGTGGATTGAACTTTATTCTGGAAACTCTTTGGCAAAGTTATAATTTATGGCCTTCAGGC AATTTTAATTTTCCTAAATTAGAGCCTTTATTCTCATATATTAATAACATAATGACTCATACTATCGTTTACGCAAGTCC CGTGATTGCCGTTATGCTGGGCGGTGAGGCTGTCCTGGGATTGCTGGCACGTTATGCTTCACAACTAAATGCTTTTGCCA TTTCACTGACTGTCAAAAGTGCGCTGGCATTTTTAATATTAATTATTTATTTTGGCCCAATACTGGCTGAACGAGTAATG CCGTTATCCTTTTTCCCAGAACAATTGCAACTATACATTGAGAAATAG Protein sequence : MGEAILYQLHSLLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELSTLNEIDIALFAAREIII GLFIACLLSSPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARLFNLFSAAVYLTNGGLNFILETLWQSYNLWPSG NFNFPKLEPLFSYINNIMTHTIVYASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILAERVM PLSFFPEQLQLYIEK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| epaR | AAZ31291.1 | EpaR | Virulence | ETT2 | Protein | 1e-82 | 99 |
| spaR | NP_457282.1 | secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 7e-41 | 48 |
| spaR | NP_806491.1 | virulence-associated secretory protein | Virulence | SPI-1 | Protein | 7e-41 | 48 |
| spaR | NP_461809.1 | needle complex export protein | Virulence | SPI-1 | Protein | 3e-41 | 48 |
| spaR | YP_217807.1 | surface presentation of antigens; secretory proteins | Virulence | SPI-1 | Protein | 8e-40 | 47 |
| spaR | AAS66867.1 | SpaR | Not tested | SSR-2 | Protein | 1e-30 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| EcolC_0848 | YP_001723847.1 | type III secretion protein SpaR/YscT/HrcT | VFG0549 | Protein | 1e-41 | 48 |
| EcolC_0848 | YP_001723847.1 | type III secretion protein SpaR/YscT/HrcT | VFG1014 | Protein | 3e-36 | 43 |
