Gene Information

Name : EcolC_0847 (EcolC_0847)
Accession : YP_001723846.1
Strain : Escherichia coli ATCC 8739
Genome accession: NC_010468
Putative virulence/resistance : Virulence
Product : HrpO family type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 917351 - 917611 bp
Length : 261 bp
Strand : +
Note : TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3; KEGG: cvi:CV_2623 surface presentation of antigens; secretory proteins

DNA sequence :
ATGGACGATATTGTTTTTGCGGGGAATAGGGCGCTGTATCTGATTTTAGTTATGTCTGCAGGACCTATTGCAGTTGCGAC
ATTTGTTGGTTTATTGGTAGGGCTTTTTCAAACGGTAACACAGTTACAAGAACAGACGTTGCCATTTGGCGTCAAATTAT
TATGCGTAAGTATTTGCTTTTTTTTAATGAGCGGATGGTATGGTGAAAAATTATATTCGTTTGGTATCGAAATGCTGAAT
TTAGCATTCGCGAGAGGATAG

Protein sequence :
MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICFFLMSGWYGEKLYSFGIEMLN
LAFARG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECs3724 NP_311751.1 EpaQ Not tested LIM Protein 5e-35 100
epaQ AAZ31292.1 EpaQ Virulence ETT2 Protein 5e-35 99
spaQ YP_217808.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 6e-23 69
spaQ NP_457283.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 6e-23 69
spaQ NP_806492.1 virulence-associated secretory protein Virulence SPI-1 Protein 6e-23 69
spaQ NP_461810.1 needle complex export protein Virulence SPI-1 Protein 6e-23 69
spaQ AAS66866.1 SpaQ Not tested SSR-2 Protein 2e-25 67
ysaS AAS66847.1 YsaS Not tested SSR-1 Protein 3e-15 52
lscS AAO18039.1 LscS Virulence TTSS locus Protein 2e-11 45
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 1e-10 44
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 1e-09 42
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 1e-09 42
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 1e-09 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcolC_0847 YP_001723846.1 HrpO family type III secretion protein VFG0550 Protein 2e-23 69
EcolC_0847 YP_001723846.1 HrpO family type III secretion protein VFG1013 Protein 5e-18 67
EcolC_0847 YP_001723846.1 HrpO family type III secretion protein VFG2454 Protein 2e-15 55
EcolC_0847 YP_001723846.1 HrpO family type III secretion protein VFG1772 Protein 2e-19 53
EcolC_0847 YP_001723846.1 HrpO family type III secretion protein VFG0043 Protein 9e-11 46
EcolC_0847 YP_001723846.1 HrpO family type III secretion protein VFG0395 Protein 4e-12 46
EcolC_0847 YP_001723846.1 HrpO family type III secretion protein VFG0187 Protein 5e-08 44