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Name : EcolC_0847 (EcolC_0847) Accession : YP_001723846.1 Strain : Escherichia coli ATCC 8739 Genome accession: NC_010468 Putative virulence/resistance : Virulence Product : HrpO family type III secretion protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4794 EC number : - Position : 917351 - 917611 bp Length : 261 bp Strand : + Note : TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3; KEGG: cvi:CV_2623 surface presentation of antigens; secretory proteins DNA sequence : ATGGACGATATTGTTTTTGCGGGGAATAGGGCGCTGTATCTGATTTTAGTTATGTCTGCAGGACCTATTGCAGTTGCGAC ATTTGTTGGTTTATTGGTAGGGCTTTTTCAAACGGTAACACAGTTACAAGAACAGACGTTGCCATTTGGCGTCAAATTAT TATGCGTAAGTATTTGCTTTTTTTTAATGAGCGGATGGTATGGTGAAAAATTATATTCGTTTGGTATCGAAATGCTGAAT TTAGCATTCGCGAGAGGATAG Protein sequence : MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICFFLMSGWYGEKLYSFGIEMLN LAFARG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ECs3724 | NP_311751.1 | EpaQ | Not tested | LIM | Protein | 5e-35 | 100 |
| epaQ | AAZ31292.1 | EpaQ | Virulence | ETT2 | Protein | 5e-35 | 99 |
| spaQ | YP_217808.1 | surface presentation of antigens; secretory proteins | Virulence | SPI-1 | Protein | 6e-23 | 69 |
| spaQ | NP_457283.1 | secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 6e-23 | 69 |
| spaQ | NP_806492.1 | virulence-associated secretory protein | Virulence | SPI-1 | Protein | 6e-23 | 69 |
| spaQ | NP_461810.1 | needle complex export protein | Virulence | SPI-1 | Protein | 6e-23 | 69 |
| spaQ | AAS66866.1 | SpaQ | Not tested | SSR-2 | Protein | 2e-25 | 67 |
| ysaS | AAS66847.1 | YsaS | Not tested | SSR-1 | Protein | 3e-15 | 52 |
| lscS | AAO18039.1 | LscS | Virulence | TTSS locus | Protein | 2e-11 | 45 |
| hrcS | AAB06006.1 | HrcS | Virulence | Hrp PAI | Protein | 1e-10 | 44 |
| hrcS | AAT96344.1 | HrcS | Virulence | S-PAI | Protein | 1e-09 | 42 |
| hrcS | AAT96263.1 | HrcS | Virulence | S-PAI | Protein | 1e-09 | 42 |
| hrcS | AAT96304.1 | HrcS | Virulence | S-PAI | Protein | 1e-09 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| EcolC_0847 | YP_001723846.1 | HrpO family type III secretion protein | VFG0550 | Protein | 2e-23 | 69 |
| EcolC_0847 | YP_001723846.1 | HrpO family type III secretion protein | VFG1013 | Protein | 5e-18 | 67 |
| EcolC_0847 | YP_001723846.1 | HrpO family type III secretion protein | VFG2454 | Protein | 2e-15 | 55 |
| EcolC_0847 | YP_001723846.1 | HrpO family type III secretion protein | VFG1772 | Protein | 2e-19 | 53 |
| EcolC_0847 | YP_001723846.1 | HrpO family type III secretion protein | VFG0043 | Protein | 9e-11 | 46 |
| EcolC_0847 | YP_001723846.1 | HrpO family type III secretion protein | VFG0395 | Protein | 4e-12 | 46 |
| EcolC_0847 | YP_001723846.1 | HrpO family type III secretion protein | VFG0187 | Protein | 5e-08 | 44 |
