Gene Information

Name : EcolC_0732 (EcolC_0732)
Accession : YP_001723733.1
Strain : Escherichia coli ATCC 8739
Genome accession: NC_010468
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 785534 - 786337 bp
Length : 804 bp
Strand : -
Note : PFAM: Integrase catalytic region; KEGG: psa:PST_1859 transposase, IS3 family

DNA sequence :
ATGTGTCGGGTACTGAATGTCGCCCGGGCCGGGTTCTATGCGTGGCTGCATAACCCTGTCTCGGCGCGTGATAAAGATAA
CCAGCGCCTGCTGATGCTTATCCGCGACTCATATTCCCTGAGCGGAGGCGTATACGGTTATCGACGGGTTCATGGCGATC
TGAACGAAATCGGGGAAACCTGCGGTAAAAACCGGGTGGGTCGGATCATGCAACTGAACCGGATTAAAGCTGTGCGCGGC
TATAAAGCTCCACGTCGTATCGCTGGCAGGCCTTCAGTCGTTGCTCCTAATCGCGTGCAGCGGCAGTTCACCGTTGTCCG
GGCCAACCAGGTCTGGGTCACTGATATTACTTATATCCGCACCTGGCAGGGCTGGCTGTATCTGGCGGTGGTTATCGATC
TCTTCGCCCGTAATGTGGTCGGCTGGTCGATGAAACCCACTCTCTCACGCGAACTGGCGCTCGACGCGCTGATGATGGCG
GTCTGGCGCCGAAAACCAGACGGCGAGGTCATCGTACATAGCGATCAAGGTAGTCAGTACGGCAGTGACGACTGGCAGCG
CTTCTGCCGGGCCAATAACCTGGCACCGAGCATGAGCCGGCGTGGCAACTGCTGGGATAATGCGGTGGCCGAATCGTTCT
TCAGTTCACTGAAAAAAGAACGCATCAGGAAGAGAATATACAAAACCCGGGATCTGGCCCGGGCGGATATCTTCGATTAC
ATTGAAGTGTTCTACAACCGGGCCCGGCGCCACAGTCACCTCGGTGGCGTCAGTCCGGAGGCCTTCGAACAGGCCTCATC
GTGA

Protein sequence :
MCRVLNVARAGFYAWLHNPVSARDKDNQRLLMLIRDSYSLSGGVYGYRRVHGDLNEIGETCGKNRVGRIMQLNRIKAVRG
YKAPRRIAGRPSVVAPNRVQRQFTVVRANQVWVTDITYIRTWQGWLYLAVVIDLFARNVVGWSMKPTLSRELALDALMMA
VWRRKPDGEVIVHSDQGSQYGSDDWQRFCRANNLAPSMSRRGNCWDNAVAESFFSSLKKERIRKRIYKTRDLARADIFDY
IEVFYNRARRHSHLGGVSPEAFEQASS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpB CAB61574.1 transposase B Not tested HPI Protein 5e-40 46
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 5e-40 46
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 1e-40 45
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 1e-40 44
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 1e-41 44
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 7e-40 44
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 6e-44 43
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 6e-44 43
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 6e-44 43
unnamed CAI43898.1 putative transposase Not tested LEE Protein 3e-30 42
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 3e-30 42
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 1e-29 42
unnamed AAC31485.1 L0006 Not tested LEE Protein 7e-30 42
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 5e-46 41
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 5e-46 41
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 3e-30 41
Z5089 NP_290241.1 transposase Not tested LEE Protein 4e-30 41
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 3e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcolC_0732 YP_001723733.1 integrase catalytic subunit VFG1631 Protein 6e-42 44
EcolC_0732 YP_001723733.1 integrase catalytic subunit VFG0785 Protein 2e-30 41