Gene Information

Name : EcolC_3519 (EcolC_3519)
Accession : YP_001726460.1
Strain : Escherichia coli ATCC 8739
Genome accession: NC_010468
Putative virulence/resistance : Virulence
Product : putative chaperone protein EcpD
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 3843565 - 3844290 bp
Length : 726 bp
Strand : +
Note : PFAM: pili assembly chaperone; KEGG: sbo:SBO_0126 probable pilin chaperone

DNA sequence : 
ATGTTTCCCATTATAAAAAAAACCGTCAGCGCGTTATTTATTAGTACGTTGTTAACCAGTGCACCTGCATTCGCCGATAT
CATAATTTCCGGCACTCGTATCATATATAATGCAGATAAAAAAGATGTTAACGTCCGTCTGGAAAACAAAGGCAATCGGC
CCTTGCTAATTCAAAACTGGTTGGATACAGGTGATGACAATGCGGATCCCAGCCAGATCAAAGTTCCGTTTACTTCTACG
CCGCCTGTATCTCGCATTGAATCTAAACGTGGGCAAACGGTAAAGGTGATGTTTACTGGAACAACACAACTTCCTGCGGA
CCGGGAAAGTGTTTTCTGGTTTAACGTGCTGGAAGTCCCGCCCAAGCCGAAAGATGCCGAATCAGACAAAAACTTATTAC
AACTGGCTTTCCGTACCCGTATCAAACTTTTTTATCGCCCAAGTGGATTAAAAGGTGAACCCGCTGAAGCACCAGCCAAA
CTGACGTGGAAGTTAAATAATGCGCAGCTTCAGGTAAACAACCCAACCCCTTACTACGTTTCATTCAATGACGTCGCAAT
TGAAAGCGGCGGTAAGAGCTACAAAGTCGACTCCAGCATGGTTGCGCCTTTTGGTCAGGTTAGTTTTGCCGTGACAGATA
TAGCGAGCAGTGTGTCTTCAGGAAAAGTTATTTACAAAGCCATTAATGATTATGGTGGCAATATTGATGGCTCCACATCG
CTTTAA

Protein sequence : 
MFPIIKKTVSALFISTLLTSAPAFADIIISGTRIIYNADKKDVNVRLENKGNRPLLIQNWLDTGDDNADPSQIKVPFTST
PPVSRIESKRGQTVKVMFTGTTQLPADRESVFWFNVLEVPPKPKDAESDKNLLQLAFRTRIKLFYRPSGLKGEPAEAPAK
LTWKLNNAQLQVNNPTPYYVSFNDVAIESGGKSYKVDSSMVAPFGQVSFAVTDIASSVSSGKVIYKAINDYGGNIDGSTS
L

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ecpD1 AAO49832.1 pilin chaperone ecpD1 Not tested SPI-3 Protein 2e-68 57
unnamed CAD33727.1 putative F17-like fimbrial chaperone Virulence PAI I 536 Protein 5e-44 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcolC_3519 YP_001726460.1 putative chaperone protein EcpD VFG0007 Protein 1e-41 43
EcolC_3519 YP_001726460.1 putative chaperone protein EcpD VFG1468 Protein 3e-44 42
EcolC_3519 YP_001726460.1 putative chaperone protein EcpD VFG1145 Protein 2e-41 41