Gene Information

Name : EcolC_1316 (EcolC_1316)
Accession : YP_001724309.1
Strain : Escherichia coli ATCC 8739
Genome accession: NC_010468
Putative virulence/resistance : Virulence
Product : pili assembly chaperone
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 1448537 - 1449289 bp
Length : 753 bp
Strand : +
Note : PFAM: pili assembly chaperone; KEGG: sbo:SBO_2375 putative chaperone

DNA sequence : 
ATGTTTAATCTGACTAACACTGCAAAAATCGTTGTCCCGGCACTGGCGCTGCTGGCGACAGCGGTCAGTTTCTCCAGCCA
CGCTTCGGTGACGCCCGACAGGACACGGCTGGTGTTTAACGAAAGCGACAAGTCCATCAGCGTCACGCTGCGCAACAACG
ATCCCAAACTGCCTTATCTGGCGCAGAGCTGGATAGAGGATGCAAAGGGCAACAAAATCAGCTCGCCGCTTGCGGTGCTT
CCGCCAGTGCAGCGCATCGATGCGATGATGAACGGCCAGGTGAAGGTGCAGGGGCTGCCGGATATCAACAAACTGCCGGC
CGACCGCGAGAGCGTGTTCTATTTCAACGTGCGCGAAATTCCGCCGAAATCAAATAAACCGAACACACTGCAGATTGCGC
TGCAGACGCGTATCAAACTGTTCTGGCGACCGAAGGCGCTGGAGAACACCAGCATGAAAAGTCCGTGGCAGCATAAGGTG
ACGCTCATCCGTAACGGCCAGGACTTCACCGTCAATAACCCGACGCCGTACTACGTGATCATCAGCAACGCCAGCGCTAA
AAAAGGCGGCAACCCGCCGGCGGGATTCACACCGCTGATGATGGAGCCGAAAACCTCCGCACCGCTGAATGCGAAGATGG
ACAGCGTGCCGGTGCTGACCTACATCAACGACTACGGCGCGCGGATGCCGCTGTACTTCAAATGCACCGGCAACAACTGC
CAGGTGGATGAAGAGCAGAGCCGCAAAGGCTGA

Protein sequence : 
MFNLTNTAKIVVPALALLATAVSFSSHASVTPDRTRLVFNESDKSISVTLRNNDPKLPYLAQSWIEDAKGNKISSPLAVL
PPVQRIDAMMNGQVKVQGLPDINKLPADRESVFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALENTSMKSPWQHKV
TLIRNGQDFTVNNPTPYYVIISNASAKKGGNPPAGFTPLMMEPKTSAPLNAKMDSVPVLTYINDYGARMPLYFKCTGNNC
QVDEEQSRKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 9e-49 44
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 3e-48 44
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 2e-48 44
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 3e-48 44
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 3e-48 44
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 3e-48 44
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 8e-43 43
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 3e-49 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcolC_1316 YP_001724309.1 pili assembly chaperone VFG1547 Protein 5e-49 44
EcolC_1316 YP_001724309.1 pili assembly chaperone VFG0896 Protein 1e-48 44
EcolC_1316 YP_001724309.1 pili assembly chaperone VFG0885 Protein 4e-43 43