Gene Information

Name : EcolC_1058 (EcolC_1058)
Accession : YP_001724052.1
Strain : Escherichia coli ATCC 8739
Genome accession: NC_010468
Putative virulence/resistance : Virulence
Product : phage transcriptional regulator, AlpA
Function : -
COG functional category : K : Transcription
COG ID : COG3311
EC number : -
Position : 1150805 - 1151071 bp
Length : 267 bp
Strand : -
Note : PFAM: Prophage CP4-57 regulatory; KEGG: sbo:SBO_4169 hypothetical protein

DNA sequence :
ATGCAAGCTGTTTTTTCTTCCCCGTCTCCCGCCCCTGTGACGCCACTGATGCCGCTGCCGGACATCACGCAGGAGCGTTT
TTTACGTCTGCCGGAAGTGATGCACCTGTGCGGCCTGTCACGCTCGACCATCTATGAACTCATCCGTAAGGGGGAATTTC
CGCCGCAGGTGAGTCTTGGCGGTAAAAATGTGGCCTGGCTGCACTCTGAAGTCACCGCATGGATGGCCGGGCGCATTGCC
GGACGCAAACGGGGGTACGACGCATGA

Protein sequence :
MQAVFSSPSPAPVTPLMPLPDITQERFLRLPEVMHLCGLSRSTIYELIRKGEFPPQVSLGGKNVAWLHSEVTAWMAGRIA
GRKRGYDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY4828 NP_458906.1 phage DNA binding protein Not tested SPI-10 Protein 1e-22 70
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 3e-10 50
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 3e-10 50
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 2e-10 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcolC_1058 YP_001724052.1 phage transcriptional regulator, AlpA VFG1118 Protein 9e-11 50