|
Name : YPK_0695 (YPK_0695) Accession : YP_001719449.1 Strain : Yersinia pseudotuberculosis YPIII Genome accession: NC_010465 Putative virulence/resistance : Virulence Product : fimbrial biogenesis outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 755933 - 758413 bp Length : 2481 bp Strand : + Note : PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: ypp:YPDSF_0481 outer membrane usher protein DNA sequence : ATGAGAATAATTAAAAAAATTCCTATAGCAATGACTACATCATTGATCATGCTCAGTGGAGCAGTCAGTGCTATTGATTT TAATACTGATGCAATGGATGCTAACGACAAACAGAATATTGATCTTTCTCATTTTACGAACGTTGGCTATATCATGCCGG GTGAGTATCGGTTAGAGATCAACGTCAATAATCACCGTATTCCCGAGCAGGTGATCGCTTTTTATGCCCGTGATGATGAA CCGAATAGCAGTGAGGTGTGCCTACCGGAAGCGGTGGTGGAACAGTTTGGTCTGAAGCCTGATGTGCTGCAAAAGATCAC ATTCTGGCATGAGGGGCAATGCGCAGATTTGCGTGAGCTGGCGGGATTAACCACGGAGGTTGATTTAGCGACCAGCACGT TAGCTATCAATGTTCCGCAAGACTGGATGGAATACAGTGACAGCAATTGGGTGCCGTCTTCTCAATGGGATGAGGGGATC TCTGGGTTTCTGTTGGATTACAACGTGAACTCGCTGTTTAGTAAGCCGAAAGAGAGTGGTTCCACCCGGAATATCAGCCT CAACGGTACGTCGGGTCTGAATGCGGGCCCTTGGCGGTTACGGGGCGATTATCAAGGGAACTACAGCCACAGCAGTGGCG AGCAGAATTCGTCTACCAGTACATTTGACTGGAGCCGGATCTATATGTATCGGGCGATCAAGTCACTGGCAGCTACCTTG AGCGTTGGTGAAAACTATTTCGCCTCCAGCCTTTTCGATACGTTCCGTTATGCCGGAGCCAGTTTGTCCAGCGATGAACG TATGTTGCCACCTAATTTACGCGGTTATGCCCCTGAGGTTAGCGGGATAGCCAGAACCAACGCCAAAGTGACGGTCTCCC AGCAGGGGCGCATACTGTATCAAACCACGGTGGCCTCCGGTCCTTTTCGTATTCAGGAACTGAGTGATTCTGTTTCCGGG CGGCTGGATGTCAGCGTGGAGGAGCAGGATGGCACGGTACAAACTTTTCAGGTGGAGACGGCTGCGGTTCCCTATCTGAC CCGCCCTGGTGCAATCCGCTATAAAACGTCGGTGGGCCAGCCCTCAACGCTGAATCATGGGACGGAAGGCCCGGTCTTTG CCAGTGGCGAATTCTCTTGGGGGGTCAGTAATCGCTGGTCACTGTTTGGCGGGGCCATTGGCTCGGGTGATTACAATGCC GTGTCGGTTGGGGTTGGCCGTGATTTATATGCATTTGGCGCCATTTCAACGGATATCACCCAAACCCGTGCATCGGGCCT TCCCAACCAAGAGACGCAGAGCGGGAAATCGTTGCGCGTCAGGTATGCCAAGCGCTTTGATGAACTGAACAGTGATATCT CGCTGGCGGGGAACCGTTTTTTTGAACGTGAATTCATGTCGATGAATCAGTATCTCGGCACCCGTTATTTCGATAATGAC CTTGGGCGCAACAAGGAAATGTATACGGTGACGGCGAGTAAAAATTTTCCTGATATCCAGACCAATATCAATTTTTCATA CAGTTACCAGAATTATTGGGATCAGCCCACGTCCAACAGCTACAGCGCGACGGTCAGCCACGCTTTTGATGCTTTTTCTC TCAAAGATATGACGGTCAACCTTTCTGCCAGCCGTAGCAAAAATAACGGCGTGAATGATGATGTGCTGTATCTGAGTTTT TCGGTGCCATTAGGCAATCAACAAACCCTCAGCTACAGCGGGCAACATAATGGTCAAGGGAACAACCAGACCGTGAATTA TTCTAACAGCTCGGCTATCGATAGCAGCTACCGGTTATCCGCAGGGGTTAACAACAGCAATGATAATGGTGCGCGCGGCC AGTTCAGCGGTTTTTATATTCATCGCAGCAGCATTGCTGAAACCAGCCTTAATGTCGCTTATGCGCAGGATGATTTTACC TCGACCGGGGTTTCTATGCGCGGGGGCGCGACGGTTACTGCGAAAGGTGCGGCATTACACGGCCCCGGTATGAGTGGCGG CACCCGCCTGATGGTCAATACCGATGATATTGCTGGCGTCCCACTGGAAGAGCGGAATATTCGTTCAAACCGTTTTGGTA TTGCTGTGCTGAATAATATTAACAGCTACTACCGTACAGATACGCGTATCGATATCAATCAGTTGGCTGATGATGTTGAA GTTAAGCAGTCTGCGGTGGAGTTCGCCCTGACCGAAGGGGCTATTGGTTATCGCCGTTTCGCCATGATGAAAGGGGAGAA GGTACTGGCAACCATCAGCCTGACCGACAGTAGCCATCCGCCTTTTGGTAGTTTGGTCATCAGTGCCAAAGGGCAGGAAC TGGGGATCGTTAGCGATGACGGTTTTACTTACCTGAGTGGAGTGGAGCCAGGAGAAACACTGGATGTCGTTTGGAGTGGT GCTAAGCAGTGCCAGGTGGCGATCCCAGCAGTAATACAGCCGCAGGCGCAAATATTATTACCCTGCATATCCGTTAACTA A Protein sequence : MRIIKKIPIAMTTSLIMLSGAVSAIDFNTDAMDANDKQNIDLSHFTNVGYIMPGEYRLEINVNNHRIPEQVIAFYARDDE PNSSEVCLPEAVVEQFGLKPDVLQKITFWHEGQCADLRELAGLTTEVDLATSTLAINVPQDWMEYSDSNWVPSSQWDEGI SGFLLDYNVNSLFSKPKESGSTRNISLNGTSGLNAGPWRLRGDYQGNYSHSSGEQNSSTSTFDWSRIYMYRAIKSLAATL SVGENYFASSLFDTFRYAGASLSSDERMLPPNLRGYAPEVSGIARTNAKVTVSQQGRILYQTTVASGPFRIQELSDSVSG RLDVSVEEQDGTVQTFQVETAAVPYLTRPGAIRYKTSVGQPSTLNHGTEGPVFASGEFSWGVSNRWSLFGGAIGSGDYNA VSVGVGRDLYAFGAISTDITQTRASGLPNQETQSGKSLRVRYAKRFDELNSDISLAGNRFFEREFMSMNQYLGTRYFDND LGRNKEMYTVTASKNFPDIQTNINFSYSYQNYWDQPTSNSYSATVSHAFDAFSLKDMTVNLSASRSKNNGVNDDVLYLSF SVPLGNQQTLSYSGQHNGQGNNQTVNYSNSSAIDSSYRLSAGVNNSNDNGARGQFSGFYIHRSSIAETSLNVAYAQDDFT STGVSMRGGATVTAKGAALHGPGMSGGTRLMVNTDDIAGVPLEERNIRSNRFGIAVLNNINSYYRTDTRIDINQLADDVE VKQSAVEFALTEGAIGYRRFAMMKGEKVLATISLTDSSHPPFGSLVISAKGQELGIVSDDGFTYLSGVEPGETLDVVWSG AKQCQVAIPAVIQPQAQILLPCISVN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 0.0 | 50 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 0.0 | 49 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 0.0 | 49 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 0.0 | 49 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 0.0 | 49 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 0.0 | 49 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 0.0 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| YPK_0695 | YP_001719449.1 | fimbrial biogenesis outer membrane usher protein | VFG0884 | Protein | 0.0 | 49 |
| YPK_0695 | YP_001719449.1 | fimbrial biogenesis outer membrane usher protein | VFG1548 | Protein | 0.0 | 49 |
| YPK_0695 | YP_001719449.1 | fimbrial biogenesis outer membrane usher protein | VFG0895 | Protein | 0.0 | 49 |
