Gene Information

Name : YPK_0053 (YPK_0053)
Accession : YP_001718820.1
Strain : Yersinia pseudotuberculosis YPIII
Genome accession: NC_010465
Putative virulence/resistance : Virulence
Product : pili assembly chaperone
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 58879 - 59646 bp
Length : 768 bp
Strand : +
Note : PFAM: pili assembly chaperone; KEGG: yps:YPTB3894 putative fimbrial chaperone

DNA sequence : 
ATGAAAGACATAAATAGCATGATATGGAGACAACAACGTTTGTGGGCAAAGACAGCGCTATTCGGGATAGCCTTGTGGCT
CACTGCGCTAACCAGTCAGGCGGCAATTAACCTGGATCGGACACGCATTATCTTTAATAGTACTGATAAATCAGCCAGTG
TTATTTTACAAAACCAGAGCCCGTCATCACCTTATTTGGCGCAATCTTGGTTGGAAAATACCAAAGGCCAAAAAATAGAG
AGTCCATTGGTGGCTTTACCCCCTATGCAGCGGATTGATGCCGGGCAAAAAAGCCAGGTTCGGATCATGAAACTACCGGA
TGCCGATAAATTACCCACTGATCGCGAGACATTATTCTATTTCAATGTGCGGGAAATCCCACCGCAAAGCGAAATGAATA
ATGTCGTACAAATTGCGATTCAAAATCGGATAAAGCTGTTTTATCGGCCCATGGCTATCAAAGCGAATTATAGCGATATC
TGGCAAGAGAAATTACAGATCAGTAAACAAGTGGGGGGGCTTAAAATTAATAACCCTACACCTTATTACATTACGTTGGC
TTATTTGAGTCAGAATGAAAAAGGTAACTTTCCTGGTTTTGACAGCGTCATGATTGCGCCTTTTGGTACTGAGTTTGTTA
AAACGCCGGGTTATAGCGGTAGCCGTTATAACGTTGGTTATATGGATGATTTTGGGGGCATTGTGATACGCACTTTTAAC
TGTTTATCAGCAGAATGCCAAATTCAGCCAGCTGAAAAGAGAAGGTGA

Protein sequence : 
MKDINSMIWRQQRLWAKTALFGIALWLTALTSQAAINLDRTRIIFNSTDKSASVILQNQSPSSPYLAQSWLENTKGQKIE
SPLVALPPMQRIDAGQKSQVRIMKLPDADKLPTDRETLFYFNVREIPPQSEMNNVVQIAIQNRIKLFYRPMAIKANYSDI
WQEKLQISKQVGGLKINNPTPYYITLAYLSQNEKGNFPGFDSVMIAPFGTEFVKTPGYSGSRYNVGYMDDFGGIVIRTFN
CLSAECQIQPAEKRR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 3e-43 48
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 6e-51 47
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 1e-51 44
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 8e-52 44
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 1e-51 44
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 1e-51 44
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 1e-51 44
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 1e-50 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPK_0053 YP_001718820.1 pili assembly chaperone VFG0885 Protein 1e-43 48
YPK_0053 YP_001718820.1 pili assembly chaperone VFG0896 Protein 5e-52 44
YPK_0053 YP_001718820.1 pili assembly chaperone VFG1547 Protein 5e-51 44