Gene Information

Name : YPK_3919 (YPK_3919)
Accession : YP_001722637.1
Strain : Yersinia pseudotuberculosis YPIII
Genome accession: NC_010465
Putative virulence/resistance : Virulence
Product : two component LuxR family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2197
EC number : -
Position : 4318275 - 4318907 bp
Length : 633 bp
Strand : +
Note : PFAM: regulatory protein LuxR; response regulator receiver; KEGG: ypi:YpsIP31758_3833 putative DNA-binding response regulator EsrB

DNA sequence : 
ATGAATACTAAATTATTGATTGTCGACGATCATGAACTCATTATTCATGGCATCAAGAATATGCTGGCCGCCTATCCGCG
CTACCTGATTGTAGGCCAAGCGGATAATGGACTTGAAGTGTATAACTTGTGCCGCCAAACTGAACCTGACATGGTCATTC
TGGATTTAGGATTACCCGGTATGGATGGCCTTGATGTTATCATTCAGTTGCTTCGCCGTTGGCCAGCGATGAAGATCCTG
ACGTTAACCGCCCGCAATGAAGAACACTATGCCAGCAGAACATTCAACAGTGGAGCCTTAGGTTATGTGCTGAAGAAAAG
TCCCCAGCAAATCCTGATGGCAGCCATTCAAACCGTCGCAATAGGCAAACGTTATATTGACCCCGCCCTTGATGCCTCTA
TGGTAATAAAACTGACTCAAGGATCCGATAATACGCCCCCGGTTCTGACACCCCGCGAGCGGCAGATATTAAAACTTATC
ACCGAGGGATCGTGTAATCGGGTTATTGCTGCTCAACTTTCTATCAGCCAAAAAACCGTCGAAACACATCGGTTGAATAT
GATGAAAAAATTGGATGTACATAAAGTCGCAGAACTTATTCACTGGTCATACCGATTAGGCTTGAATGTCTAA

Protein sequence : 
MNTKLLIVDDHELIIHGIKNMLAAYPRYLIVGQADNGLEVYNLCRQTEPDMVILDLGLPGMDGLDVIIQLLRRWPAMKIL
TLTARNEEHYASRTFNSGALGYVLKKSPQQILMAAIQTVAIGKRYIDPALDASMVIKLTQGSDNTPPVLTPRERQILKLI
TEGSCNRVIAAQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGLNV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0255 YP_002345335.1 two-component response regulator Not tested Not named Protein 1e-88 99
ssrB NP_805062.1 two-component response regulator Virulence SPI-2 Protein 2e-41 56
ssrB NP_460356.1 transcriptional activator Virulence SPI-2 Protein 2e-41 56
ssrB YP_216399.1 secretion system transcriptonal activator Virulence SPI-2 Protein 2e-41 56
ssrB NP_456137.1 putative two-component response regulator Virulence SPI-2 Protein 2e-41 56
ssrB CAB09344.1 SsrB Virulence SPI-2 Protein 5e-36 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPK_3919 YP_001722637.1 two component LuxR family transcriptional regulator VFG0492 Protein 6e-42 56
YPK_3919 YP_001722637.1 two component LuxR family transcriptional regulator VFG2440 Protein 3e-25 41