Gene Information

Name : YPK_3899 (YPK_3899)
Accession : YP_001722617.1
Strain : Yersinia pseudotuberculosis YPIII
Genome accession: NC_010465
Putative virulence/resistance : Virulence
Product : secretion system apparatus protein SsaU
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4792
EC number : -
Position : 4300448 - 4301515 bp
Length : 1068 bp
Strand : -
Note : member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli

DNA sequence : 
ATGTCCACTGAAAAGAATGAAAAACCCACGCCCAAGCGCCTTAAGGAAGCCAAAGAAAAAGGGCAGGTAGTCAAAAGTGT
TGAGATAACCTCCGGCGTACAGTTGGTGGCGCTGGTTATCTACTTTTTACTGACAGGATATAGCTTGGTCGAGCAGGCTA
AAGCCCTTATCCGCAGTTCAATCATACAATTACAGCAACCACTTACTCTGGCTTTAGCCCGTATCGGTGCCGAGTGCATG
ACGGTATTGATGCATATCGTGGTGGTCTTGGGCGGGGCGCTGATCGTGGTCACCATTATTGCCGGTATTGCTCAGGTTGG
GCCGTTGTTGGCGACCAAAGCGGTGTCGTTTAAAGGTGAGCGAATTAACCCCATTCAAAATGCTAAACAACTTTTCTCAT
TGCGCAGCGTGTTTGAGCTGATGAAATCATTATTGAAAGTGGGGGTGCTAACGCTGATTTTTGGTTACTTATTGATACAG
TATGCGCCCTCTTTTGGTTATTTGACCCACTGTGGCAGTCGCTGTGCTCTCCCGGTATTCTCGACATTAATGGGGTGGTT
ATTAGGTTCACTGATTGCCTGCTATCTGGTTTTTTCACTGATGGATTATGCTTTTCAGCGCTACACCATCATGAAACAAC
TGAAAATGTCCCATGATGAGGTCAAGCGGGAGCATAAAGACAGTAATGGGGATCCACACATTAAGCAGAAGCGGCGGCAG
CTACAACATGAAGTACAAAGTGGTAGTTTTGCCACTAACGTGCGCCGTTCCACCGCGGTAGTCCGTAACCCGACACATTT
TGCCGTTTGTCTGATTTATCACCCAGAAGAGACGCCGCTACCGATAGTGATTGAAAAAGGTCATGACGAGCAGGCTGCAT
TGATTGTGAGCCTCGCAGAGCAGAGCGGTATCCCTGTGGTAGAAAACATTGCGCTGGCGCGCGCATTACACCGTGATGTT
GCTTGTGGTGACACCATCCCGGAACAATTCTTCGAGCCAGTTGCTGCGCTCTTACGTATGGCACTGGAGTTGGATTATCA
GCCATCAAGTGATGATCCACCGCGCTAG

Protein sequence : 
MSTEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSIIQLQQPLTLALARIGAECM
TVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLIQ
YAPSFGYLTHCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRRQ
LQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQSGIPVVENIALARALHRDV
ACGDTIPEQFFEPVAALLRMALELDYQPSSDDPPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0273 YP_002345355.1 secretion system apparatus protein SsaU Virulence Not named Protein 1e-159 99
ssaU CAA68202.1 secretion system apparatus, SsaU Virulence SPI-2 Protein 5e-73 49
ssaU YP_216430.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 4e-72 49
ssaU NP_460387.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 7e-73 49
ssaU NP_456106.1 putative type III secretion protein Virulence SPI-2 Protein 4e-73 49
ssaU NP_805093.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 4e-73 49
escU AFO66307.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-58 42
escU AFO66403.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-58 42
escU NP_290280.1 secretion system apparatus protein SsaU Virulence LEE Protein 1e-62 42
escU CAI43886.1 EscU protein Virulence LEE Protein 7e-63 42
ECs4580 NP_312607.1 secretion system apparatus protein SsaU Virulence LEE Protein 1e-62 42
escU CAC81850.1 EscU protein Virulence LEE II Protein 5e-63 42
escU YP_003223487.1 T3SS structure protein EscU Virulence LEE Protein 9e-63 42
escU YP_003232141.1 secretion system apparatus protein SsaU Virulence LEE Protein 7e-63 42
escU AAC38372.1 EscU Virulence LEE Protein 1e-62 42
escU AAC31525.1 L0046 Virulence LEE Protein 1e-62 42
escU ACU09470.1 secretion system apparatus protein SsaU Virulence LEE Protein 1e-62 42
escU AAK26703.1 EscU Virulence LEE Protein 7e-63 42
escU YP_003236100.1 T3SS structure protein EscU Virulence LEE Protein 2e-62 42
escU AAL57530.1 EscU Virulence LEE Protein 7e-63 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPK_3899 YP_001722617.1 secretion system apparatus protein SsaU VFG0522 Protein 3e-73 49
YPK_3899 YP_001722617.1 secretion system apparatus protein SsaU VFG0824 Protein 6e-63 42
YPK_3899 YP_001722617.1 secretion system apparatus protein SsaU VFG0718 Protein 7e-63 42