Gene Information

Name : YPK_3892 (YPK_3892)
Accession : YP_001722610.1
Strain : Yersinia pseudotuberculosis YPIII
Genome accession: NC_010465
Putative virulence/resistance : Virulence
Product : transport system permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 4292903 - 4293907 bp
Length : 1005 bp
Strand : +
Note : PFAM: transport system permease protein; KEGG: ypm:YP_0435 hemin transport system permease protein HmuU

DNA sequence : 
ATGAATGGTCGTGTTCAGCCACGACTGATGCTGGGCTTCTTACTGATATTGCTAGTCATTCTGGCGCTGGGCTCAGCTAA
TATGGGGGCCTTATCGCTCTCATTTCGCACGCTATGGAACACCTCCACCAATGATGCCATGTGGCACATTTGGTTGAATA
TCCGCCTGCCACGGGTGTTATTGGCTGTCGTGGTGGGGTGTGCATTGGCGGTCTCCGGCACCATTATGCAAGGGTTATTC
CGTAACCCGCTGGCGGACCCAGGTTTGTTGGGCATCAGTAGCGGCGCAGCGCTTTGCGTCGGGCTGATTATCGTGATGCC
TTTCAGCCTACCGCCGTTACTCGCGCTGTATAGCCATATGGTTGGGGCCTTTATCGGCAGTCTGGCTATTTCTACTATTA
TTTTTACCCTCAGCCGTTGGGGGCATGGCAATCTGGCTCGTCTACTGCTAGCCGGTATTGCGATTAATGCCTTATGCGGT
GCGGCGGTTGGGGTGCTGACCTATATCAGTGATGACCAACAATTACGCCAGTTCTCGCTATGGAGTATGGGGAGTTTAGG
GCAAGCGCAGTGGTCGACACTGCTGGTCGCATCCTCCCTGATCCTGCCTACCTGTATTTTGGGGCTGCTACAGGCCCGCC
AACTGAATTTGTTGCAGTTGGGGGATGAAGAAGCACACTACCTTGGCGTCAATGTTCGGCAAGCCAAACTACGCTTACTG
CTACTCAGTGCCATCCTGATTGGTGCCGCGGTGGCGGTCAGTGGCGTGATCGGCTTTATCGGGTTGGTGGTGCCACATCT
GATCCGTATGCGTATCGGCGCGGATCATCGTTGGTTGCTACCCGGCGCGGCGTTGGGGGGGGCCTGCCTGCTACTGACGG
CCGATACACTGGCTCGCACACTGGTTGCTCCGGCGGAAATGCCCGTCGGTCTGTTAACCAGCCTGTTGGGTGGGCCTTAT
TTTCTGTGGCTGATTTTACGTCAGCGGGAGCAACGCAGTGGTTGA

Protein sequence : 
MNGRVQPRLMLGFLLILLVILALGSANMGALSLSFRTLWNTSTNDAMWHIWLNIRLPRVLLAVVVGCALAVSGTIMQGLF
RNPLADPGLLGISSGAALCVGLIIVMPFSLPPLLALYSHMVGAFIGSLAISTIIFTLSRWGHGNLARLLLAGIAINALCG
AAVGVLTYISDDQQLRQFSLWSMGSLGQAQWSTLLVASSLILPTCILGLLQARQLNLLQLGDEEAHYLGVNVRQAKLRLL
LLSAILIGAAVAVSGVIGFIGLVVPHLIRMRIGADHRWLLPGAALGGACLLLTADTLARTLVAPAEMPVGLLTSLLGGPY
FLWLILRQREQRSG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecD AAL08452.1 FecD Virulence SRL Protein 3e-13 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPK_3892 YP_001722610.1 transport system permease BAC0163 Protein 2e-13 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPK_3892 YP_001722610.1 transport system permease VFG0922 Protein 6e-66 68
YPK_3892 YP_001722610.1 transport system permease VFG1043 Protein 1e-13 41