Gene Information

Name : YPK_3855 (YPK_3855)
Accession : YP_001722573.1
Strain : Yersinia pseudotuberculosis YPIII
Genome accession: NC_010465
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : -
Position : 4246658 - 4248013 bp
Length : 1356 bp
Strand : -
Note : unwinds double stranded DNA

DNA sequence :
ATGGAAGGGCTGAAGCTTCCGCCGCATTCGCTGGAGGCTGAGCAGTCCGTGTTGGGCGGTTTGATGCTGGATAACGAACG
TTGGGATAACGTATCAGAACGTGTCGCCAGCAAGGACTTTTTCAGCCGCCCGCATCGCCGGATCTTTACTGAAATGCAGC
GCTTGTTGGAAAACAGCAAGCCGATCGACTTGATCACCTTGTCCGAATCGCTAGAGCAAAAAGGCGATTTAGACTCGGTG
GGGGGCTTTGCCTATCTGGCCGAACTATCTAAAAACACGCCAAGTGCGGCGAATATCGGTGCTTATGCCGATATCGTGCG
TGAACGTGCCGTGGTTCGTGAAATGATCTCTGTGGCGAATGAGATCGCCGATGCCGGCTACGATCCCCAAGGGCGCAGCA
GTGAAGATCTGCTGGATTTGGCGGAGTCCAAAGTTTTCCAAATCGCAGAAAGCCGCGCCAGTAAAGATGAAGGTCCTAAA
AGCGTTGATCGCATTCTGGAAGATACCGTCGCCCGTATTGAACAACTTTATCAGCGCCCACACGATGGTGTCACTGGTGT
TTCAACGGGCTTTACTGATCTCGATAAAAAGACCGCTGGGCTACAAAAATCCGATCTGATCATTGTGGCGGCCCGTCCAT
CAATGGGGAAAACCACCTTTGCGATGAACCTGTGTGAAAACGCGGCGATGATGCAGGACAAACCGGTGTTGATCTTCAGC
CTGGAGATGCCCGGCGATCAGATCATGATGCGTATGCTGGCATCCTTGTCACATGTCGATCAGACCCGCATCCGTACCGG
GCAGTTAGATGATGAGGATTGGGCGCGTATTTCCAGCACCATGGGCATATTGATGGAAAAACGCAATATGTACATTGATG
ACTCCTCGGGTCTGACACCAACGGAAGTCCGCTCTCGTGCGCGGCGTATCTTCCGTGAACACGGGGGGTTGAGCCTGATC
ATGATCGACTACCTGCAATTAATGCGGGTGCCGTCCTTGTCGGATAACCGTACGCTCGAAATCGCGGAAATTTCACGCTC
ACTGAAAGCCTTGGCGAAAGAGCTGCAAGTGCCGGTAGTCGCGCTCTCCCAGCTTAACCGTAGTTTGGAGCAGCGTGCCG
ATAAGCGCCCGGTTAACTCCGACTTGCGTGAGTCCGGATCGATTGAGCAGGATGCCGACTTAATCATGTTTATTTACCGT
GATGAGGTTTATCACGAAAACAGTGATGAGAAAGGGATCGCACAAATTATTTTGGGTAAACAGCGTAATGGCCCGATCGG
TTCCGTTCGTCTGAAATTTAACGGTCAGTGGTCACGTTTTGATAACTATGCGGGTCCGCAATATGACGACGAGTAG

Protein sequence :
MEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASKDFFSRPHRRIFTEMQRLLENSKPIDLITLSESLEQKGDLDSV
GGFAYLAELSKNTPSAANIGAYADIVRERAVVREMISVANEIADAGYDPQGRSSEDLLDLAESKVFQIAESRASKDEGPK
SVDRILEDTVARIEQLYQRPHDGVTGVSTGFTDLDKKTAGLQKSDLIIVAARPSMGKTTFAMNLCENAAMMQDKPVLIFS
LEMPGDQIMMRMLASLSHVDQTRIRTGQLDDEDWARISSTMGILMEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLI
MIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYR
DEVYHENSDEKGIAQIILGKQRNGPIGSVRLKFNGQWSRFDNYAGPQYDDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 5e-102 53
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 2e-106 53
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 6e-106 53
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 2e-106 53
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 6e-101 50
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 4e-92 50
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 4e-92 50
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 5e-87 47
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 9e-79 46