Gene Information

Name : YPK_3137 (YPK_3137)
Accession : YP_001721861.1
Strain : Yersinia pseudotuberculosis YPIII
Genome accession: NC_010465
Putative virulence/resistance : Virulence
Product : HSR1-like GTP-binding protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG3596
EC number : -
Position : 3428872 - 3429759 bp
Length : 888 bp
Strand : -
Note : PFAM: GTP-binding protein HSR1-related; KEGG: eca:ECA2860 hypothetical protein

DNA sequence :
ATGAAACAACCTTCAGGCTATACCCTGATTCGCCGCCATCTGCGGCGTTACCCGCGTTCATTGCGACAGCATCTTCTCAA
TGAGCTCAACCGGTTGGTCACCTATGAGCCGGTTATCGGCATCATGGGTAAAACCGGCGTTGGTAAAAGCTCACTCTGTA
ACGCTCTGTTTCGCAGCGAGTCCTGTGCTGTCAATGCCGTGAAGGCCTGCACTCGCCAGCCACAGCGCGTCCGGCTCCGC
TTTGGAAGCCATTATCTGACACTTATCGACTTACCCGGTGTGGGAGAGAACCAGCAGCGCGACGGTGAATACCGGGAACT
GTATCGGGAGCAATTACCTGAGCTCGATATGGTGCTGTGGGTGCTTAAAGCCGATGATCGTGCGTTTTCGGTAGAAGAGC
AATTTCACCAGGCAGTGTTTGAGCAGTACAACGGGGTGTTACCGCCTGTACTGTGGATTCTCAATCAGGTTGATAAAACC
GAACCTTCTGAACAGTGGAACTGGTCGTCAGCGCAGCCATCTGCCAAACAGGCCGAGCATATTACCCTGAAGCAGCAGGC
GGTGGCTCGCCAAATGAGGATAGATGAGCTCGATATCCTTTCGGTCTCTGTCCGTGGACGTTATCACCTGTCTCGCCTGG
TAGAGGCTATGATAACCCGGCTCCCAAAGCAGGCCCGTAGCCCATTGGTGCCGCATCTGCAAACTGAGTATCGCACCACC
GGAGTCATCAGCAGCGCCCGAAGCAGCTTCGGGGAAAGTGTGGTTGAGGTCATTAATCGGGTGATCGATTTGACACCTCT
GCCGCAGGTTGCCCGGCGAGCCTTACAGGCTGTCACCCACTCTGTTACGCGGGCGGCGGGTACCGTTTGGTCCTTCTTTT
TCGGATAA

Protein sequence :
MKQPSGYTLIRRHLRRYPRSLRQHLLNELNRLVTYEPVIGIMGKTGVGKSSLCNALFRSESCAVNAVKACTRQPQRVRLR
FGSHYLTLIDLPGVGENQQRDGEYRELYREQLPELDMVLWVLKADDRAFSVEEQFHQAVFEQYNGVLPPVLWILNQVDKT
EPSEQWNWSSAQPSAKQAEHITLKQQAVARQMRIDELDILSVSVRGRYHLSRLVEAMITRLPKQARSPLVPHLQTEYRTT
GVISSARSSFGESVVEVINRVIDLTPLPQVARRALQAVTHSVTRAAGTVWSFFFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec64 AAW51747.1 Aec64 Not tested AGI-3 Protein 4e-49 46
yeeP ADD91709.1 YeeP Not tested PAI-I AL862 Protein 4e-49 46
APECO1_1093 YP_853113.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 3e-48 46
yeeP CAE85196.1 YeeP protein Not tested PAI V 536 Protein 7e-49 46
unnamed AAL08471.1 unknown Not tested SRL Protein 2e-49 45
ECO103_3582 YP_003223441.1 hypothetical protein Not tested LEE Protein 9e-49 45
sap NP_838477.1 hypothetical protein Not tested SHI-1 Protein 7e-49 45
unnamed AAK00473.1 unknown Not tested SHI-1 Protein 2e-48 45
unnamed AAL99256.1 unknown Not tested LEE Protein 9e-49 45
unnamed CAD66199.1 hypothetical protein Not tested PAI III 536 Protein 2e-49 45
sap NP_708764.1 hypothetical protein Not tested SHI-1 Protein 3e-48 45
Z1210 NP_286745.1 histone Not tested TAI Protein 1e-47 44
Z1650 NP_287153.1 hypothetical protein Not tested TAI Protein 1e-47 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPK_3137 YP_001721861.1 HSR1-like GTP-binding protein VFG0654 Protein 1e-48 45
YPK_3137 YP_001721861.1 HSR1-like GTP-binding protein VFG1062 Protein 1e-49 45
YPK_3137 YP_001721861.1 HSR1-like GTP-binding protein VFG1674 Protein 1e-49 45