Gene Information

Name : YPK_3134 (YPK_3134)
Accession : YP_001721858.1
Strain : Yersinia pseudotuberculosis YPIII
Genome accession: NC_010465
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3426638 - 3427459 bp
Length : 822 bp
Strand : -
Note : PFAM: protein of unknown function DUF932; KEGG: ecj:JW0242 conserved hypothetical protein

DNA sequence :
ATGACCCGATTAGCCAGCCGATTTGGTGCAGTGAACCTAGTGTGCCGTGACCGCCCGTTAACCCGCGACGAATTGGCACA
TTATGTACCGAGTGTTTTCAGCGAAGAAAAGCATGAATCCCGCAGCGACCGATACACCTACATCCCGACCATAACCCTGC
TCGATAACCTGCAGCGTGAAGGCTTCCAGCCGTTCTTTGCCTGCCAGACCCGTGTGCGGGACCAGAGCAAGCGAGAGCAC
ACCAAACACATGCTGCGCCTGCGTCGCGAAGGCCAAATCACTGGCAAACAGGTGCCAGAAATCATCTTGCTTAACAGCCA
TGATGGTTCAAGCTCATACCAGATGCTGCCGGGTTTATTTAGATCGGTTTGTCAAAATGGGCTGATTTGCGGTGAGAGTT
TTGGTGAGGTGCGCGTGCCCCATAAAGGCAACGTGGTGGAGAAAGTCATTGAAGGAGCTTACGAAGTACTGGGAATTTTT
GACCGTGTGGAAGAGAAGCGCGATGCCATGCAGTCGCTGATGTTACCTCCACCAGCACAGCAGGCGATGGCAAAAGCGGC
ATTAACGTATCGTTTTGGTGAAGAGCATCAGCCGGTAAGTGAATCACAAATCCTTTCCCCGCGCCGCTGGCAGGATGAGA
GTAACGACCTGTGGACCACTTATCAGCGGATTCAGGAAAACCTGATTAAAGGTGGGCTGTCGGGGCGAACGACCAAAGGT
AAACGTGCCCAAACCCGTGCTGTAAAAGGTATTGACGGCGATGTGAAGCTTAACCGCGCCCTGTGGGTTATGGCCGAGAA
TATGCTGCAGTTTGCCTCATGA

Protein sequence :
MTRLASRFGAVNLVCRDRPLTRDELAHYVPSVFSEEKHESRSDRYTYIPTITLLDNLQREGFQPFFACQTRVRDQSKREH
TKHMLRLRREGQITGKQVPEIILLNSHDGSSSYQMLPGLFRSVCQNGLICGESFGEVRVPHKGNVVEKVIEGAYEVLGIF
DRVEEKRDAMQSLMLPPPAQQAMAKAALTYRFGEEHQPVSESQILSPRRWQDESNDLWTTYQRIQENLIKGGLSGRTTKG
KRAQTRAVKGIDGDVKLNRALWVMAENMLQFAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
z1215 CAD33785.1 Z1215 protein Not tested PAI I 536 Protein 8e-96 74
unnamed CAI43843.1 hypothetical protein Not tested LEE Protein 3e-93 73
SF2994 NP_708768.1 hypothetical protein Not tested SHI-1 Protein 7e-92 73
aec71 AAW51754.1 Aec71 Not tested AGI-3 Protein 3e-93 73
yafZ ADD91704.1 YafZ Not tested PAI-I AL862 Protein 3e-93 73
Z1215 NP_286750.1 hypothetical protein Not tested TAI Protein 4e-94 73
unnamed CAD42096.1 hypothetical protein Not tested PAI II 536 Protein 1e-94 73
Z1655 NP_287158.1 hypothetical protein Not tested TAI Protein 4e-94 73
yafZ CAE85199.1 YafZ protein Not tested PAI V 536 Protein 4e-96 73
c5156 NP_757004.1 hypothetical protein Not tested PAI II CFT073 Protein 3e-91 73
yafZ YP_854321.1 hypothetical protein Not tested PAI I APEC-O1 Protein 2e-91 73
ORF_47 AAZ04456.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 2e-91 73
S3199 NP_838482.1 hypothetical protein Not tested SHI-1 Protein 7e-92 73
ECO103_3587 YP_003223444.1 hypothetical protein Not tested LEE Protein 5e-93 72
unnamed CAD66201.1 hypothetical protein Not tested PAI III 536 Protein 3e-90 71
ORF SG86 AAN62307.1 conserved hypothetical protein Not tested PAGI-3(SG) Protein 2e-73 55
ORF C80 AAN62174.1 conserved hypothetical protein; associated with oriT region on plasmids Not tested PAGI-2(C) Protein 1e-74 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPK_3134 YP_001721858.1 hypothetical protein VFG1526 Protein 5e-96 74
YPK_3134 YP_001721858.1 hypothetical protein VFG1615 Protein 8e-95 73
YPK_3134 YP_001721858.1 hypothetical protein VFG0658 Protein 3e-92 73
YPK_3134 YP_001721858.1 hypothetical protein VFG1676 Protein 1e-90 71