|
Name : YPK_3133 (YPK_3133) Accession : YP_001721857.1 Strain : Yersinia pseudotuberculosis YPIII Genome accession: NC_010465 Putative virulence/resistance : Virulence Product : DNA repair protein RadC Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2003 EC number : - Position : 3426097 - 3426567 bp Length : 471 bp Strand : - Note : PFAM: DNA repair protein RadC; KEGG: ent:Ent638_0474 DNA repair protein RadC DNA sequence : ATGTCTGCACTTCATCTATCTCCGGTATTCCCTGAAAATGAGCAGCGCGTTATCCGGCGAGCCCTGCGCCTGCTGGAGAA ATATCAGCGCCAGCCGGGTGAACAGTTTACTGCCACCAGCTTTGCTAAAAGCTGGGTGCAATTACAGTTGGCTAGCCAAG AGCGGGAGGTCTTTCTCGTGATGTACCTTGATAACCAGCATTGCCTGTTGGGGCACGAAGCGTTGTTTACGGGTTCCATC AGCCATACAGAAGTACATCCCCGTGAGCTGGTGAAAGCGGCTCTGCGCCACAACGCCGCTGCAGTGATTCTGGCGCATAA CCATCCGTCAGGTACGACAGAAATCAGCCAGCAGGACAAACATATTACGCAGCGGATCGTAAAAGCGTTGGCGTTGGTCG AAGTGCGAGTGCTGGATCATCTTGTAGTTGGGAATGAAGTGGTTTCTTTTGCTGAACAGGGTTTGCTTTAA Protein sequence : MSALHLSPVFPENEQRVIRRALRLLEKYQRQPGEQFTATSFAKSWVQLQLASQEREVFLVMYLDNQHCLLGHEALFTGSI SHTEVHPRELVKAALRHNAAAVILAHNHPSGTTEISQQDKHITQRIVKALALVEVRVLDHLVVGNEVVSFAEQGLL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAK00479.1 | unknown | Not tested | SHI-1 | Protein | 4e-33 | 57 |
| z1217 | CAD33787.1 | Z1217 protein | Not tested | PAI I 536 | Protein | 1e-33 | 54 |
| Z1657 | NP_287160.1 | RadC family DNA repair protein | Not tested | TAI | Protein | 1e-32 | 54 |
| unnamed | CAD42098.1 | hypothetical protein | Not tested | PAI II 536 | Protein | 6e-33 | 54 |
| Z1217 | NP_286752.1 | RadC family DNA repair protein | Not tested | TAI | Protein | 5e-33 | 54 |
| unnamed | CAD66203.1 | hypothetical protein | Not tested | PAI III 536 | Protein | 6e-34 | 54 |
| yeeS | AAZ04458.1 | putative RadC-like protein | Not tested | PAI I APEC-O1 | Protein | 5e-34 | 54 |
| ECO103_3589 | YP_003223446.1 | radC-like protein YeeS | Not tested | LEE | Protein | 1e-33 | 54 |
| yeeS | YP_854323.1 | radC-like protein YeeS | Not tested | PAI I APEC-O1 | Protein | 7e-34 | 54 |
| c5152 | NP_757000.1 | radC-like protein yeeS | Not tested | PAI II CFT073 | Protein | 7e-34 | 54 |
| yeeS | CAE85201.1 | YeeS protein | Not tested | PAI V 536 | Protein | 1e-33 | 54 |
| yeeS | CAI43846.1 | YeeS protein | Not tested | LEE | Protein | 1e-33 | 54 |
| yeeS | ADD91702.1 | YeeS | Not tested | PAI-I AL862 | Protein | 1e-33 | 54 |
| yeeS | NP_838484.1 | RADC family DNA repair protein | Not tested | SHI-1 | Protein | 4e-33 | 54 |
| unnamed | AAL08475.1 | unknown | Not tested | SRL | Protein | 2e-33 | 54 |
| yeeS | NP_708770.1 | RADC family DNA repair protein | Not tested | SHI-1 | Protein | 4e-33 | 54 |
| unnamed | AAL67345.1 | intergenic-region protein | Not tested | PAI II CFT073 | Protein | 2e-33 | 54 |
| yeeS | CAI43901.1 | YeeS protein | Not tested | LEE | Protein | 2e-33 | 54 |
| aec73 | AAW51756.1 | Aec73 | Not tested | AGI-3 | Protein | 2e-33 | 54 |
| VC0395_A1383 | YP_001217326.1 | DNA repair protein RadC | Not tested | VPI-2 | Protein | 2e-25 | 52 |
| VC1786 | NP_231421.1 | DNA repair protein RadC | Not tested | VPI-2 | Protein | 2e-25 | 52 |
| VPI2_0034 | ACA01849.1 | DNA repair protein RadC | Not tested | VPI-2 | Protein | 8e-26 | 52 |
| VC0510 | NP_230161.1 | DNA repair protein RadC-like protein | Not tested | VSP-2 | Protein | 2e-23 | 51 |
| radC | AAN62140.1 | putative DNA repair protein RadC | Not tested | PAGI-2(C) | Protein | 2e-23 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| YPK_3133 | YP_001721857.1 | DNA repair protein RadC | VFG1528 | Protein | 6e-34 | 54 |
| YPK_3133 | YP_001721857.1 | DNA repair protein RadC | VFG1617 | Protein | 3e-33 | 54 |
| YPK_3133 | YP_001721857.1 | DNA repair protein RadC | VFG1678 | Protein | 3e-34 | 54 |
| YPK_3133 | YP_001721857.1 | DNA repair protein RadC | VFG1066 | Protein | 9e-34 | 54 |
| YPK_3133 | YP_001721857.1 | DNA repair protein RadC | VFG0660 | Protein | 1e-33 | 54 |
| YPK_3133 | YP_001721857.1 | DNA repair protein RadC | VFG1119 | Protein | 4e-26 | 52 |
