Gene Information

Name : YPK_2543 (YPK_2543)
Accession : YP_001721273.1
Strain : Yersinia pseudotuberculosis YPIII
Genome accession: NC_010465
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2786994 - 2787812 bp
Length : 819 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ypa:YPA_0827 putative iron-siderophore transport system, ATP-binding component

DNA sequence : 
ATGACACCATTGGAGAACCCGGGCGATATCAGTGATAAACCGCGTTTAACCACCCAAAAACTGTCACTGGGCTACGGCCA
GCAACTTATTATCAATAAGCTTAGCCTGAGCATTAAAAACGGCGCGTTCAGCGTCATTATCGGCCCAAACGGTTGTGGTA
AATCGACGTTGTTGCGAGCGCTCAGCCGTAGCTTGTTACCACAAAATGGCAGTATCAGGTTAGATCAACAGGATATTCAG
CACTACAAAGCCAAGGTCTTTGCCCGCCAGTTATCGCTACTTTCTCAGGGCGCAAGTATTTCTGAAACCTTGACCGTGTT
TGATCTGGTTTCCCGTGGCCGTTACGCCCATCAATCATTCTTTCATCAATGGTCGACGGAAGATGAACGTATCGTAAAAG
CCGCTATCAGCGCCGTTAATCTGGAGAGTCTGGTGCAGCAGAGAGTCAGTGAACTCTCTGGTGGTCAGCGGCAACGTGCG
TGGTTTGCCATGACACTGGCTCAACATACACCGATTGTTTTATTGGATGAACCGACCACATATTTGGATATCGCGCACCA
AATTGAAATGCTGGATTTATGCCAAGAACTGCAACAACAGGGGAAAACGCTGGTATTGGTGCTACACGATATTAATCAGG
CTCTGCGTTATGCCACCCACCTGATTATGTTGAAAGAGGGGCAAATTTATGCAGAAGGTTTACCAGAATCTATCGTTACT
GAAGACAGCATTGCCGCCGTTTTTGGGCTACGTTGCCGGATCATTACTGACCCTGAATCCGGCAAGCCTTTGGTGATACC
CCGCCGTCAGTCGCGTTAG

Protein sequence : 
MTPLENPGDISDKPRLTTQKLSLGYGQQLIINKLSLSIKNGAFSVIIGPNGCGKSTLLRALSRSLLPQNGSIRLDQQDIQ
HYKAKVFARQLSLLSQGASISETLTVFDLVSRGRYAHQSFFHQWSTEDERIVKAAISAVNLESLVQQRVSELSGGQRQRA
WFAMTLAQHTPIVLLDEPTTYLDIAHQIEMLDLCQELQQQGKTLVLVLHDINQALRYATHLIMLKEGQIYAEGLPESIVT
EDSIAAVFGLRCRIITDPESGKPLVIPRRQSR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-49 47
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-49 47
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-57 47
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-57 47
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-57 47
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-57 47
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-45 45
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-48 44
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-47 42
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-50 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-50 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-50 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-50 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPK_2543 YP_001721273.1 ABC transporter-like protein BAC0164 Protein 9e-46 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPK_2543 YP_001721273.1 ABC transporter-like protein VFG0925 Protein 1e-63 55
YPK_2543 YP_001721273.1 ABC transporter-like protein VFG1042 Protein 9e-46 45