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Name : YPK_2325 (YPK_2325) Accession : YP_001721055.1 Strain : Yersinia pseudotuberculosis YPIII Genome accession: NC_010465 Putative virulence/resistance : Unknown Product : PBSX family phage portal protein Function : - COG functional category : R : General function prediction only COG ID : COG5518 EC number : - Position : 2564513 - 2565544 bp Length : 1032 bp Strand : - Note : TIGRFAM: phage portal protein, PBSX family; PFAM: portal protein; KEGG: yps:YPTB1860 similar to capsid portal protein bacteriophage 186 DNA sequence : ATGAGCCGCAAACAGCGAAATAAACGCAATACTGCGGCAATAGTAAAAAGCGCCGTACCACAAGCCGAGGCGTTTACTTT TGACGACCCGATCCCAATGATGGATCGACGCGATATTCTGGATTATCTGGAATGCGCAGTAATGGATCGCTGGTATGAGC CGCCGGTGTCATTCAACGGTCTGGCTAAATCCTTTCGTGCGGCGGTGCATCACAGCTCGCCAATCTATATGAAACGTAAT GTACTGGTTAGTCTGTTTGAGCCTCACCGATTACTCTCGAAACAGGATTTTAGCCGTTATGCGTTGGATTTCTTAGTGTT CGCCAATTCATTTTTAGAAGCCCGCTATAATCGGTTGGGGGGATTGATGAAGCTAGTGCCTAGCCCGGCCAAATATACCC GCCGCGGCGTGGAGGCGGACACCTATTGGTATGTCTCATCCTATGCCAACCCACACCCGTTTGAAGCCAATAGCGTTTTT CACCTGCTAGACCCGGATATTAATCAGGAGATCTACGGCGTTCCTGAATATCTCGCCTCGCTAAACTCGACCTGGCTTAA TGAAGCAGCCACTTTGTTCCGCCGTAAATATTATCTGAATGGCAGTCACGCTGGATTTATTCTGTATATGAACGACGCCG CCCATAAACAGGAGGATATCGACGCCTTACGTAAGGCGCTGAAAGAATCCAAAGGGCCGGGCAATTTCCGCAATCTGTTT ATGTATGCCCCGGCCGGTAAAAAGGACGGCATACAGGTGATCCCACTTGCAGAGGTTGCCGCCAAGGATGAATTTGCCAG CATTAAGAACGTCACCCGCGACGACCAGCTCGCTATGCAACGGGTGCCACCTCAACTGATGGGGATTTTACCCAATAACA CCGGCGGTTTTGGTGATGTAGAAAAAGCCGCGCGGGTGTTTGCCATTAACGAACTGGCCCCCTTGCAAGAACGGCTGATG GAAATAAATGATTGGGTTGGGGAGGAAGTTGTCAGATTTAAGCCGTATGAATTACTTGCCAAACAAGAGTAA Protein sequence : MSRKQRNKRNTAAIVKSAVPQAEAFTFDDPIPMMDRRDILDYLECAVMDRWYEPPVSFNGLAKSFRAAVHHSSPIYMKRN VLVSLFEPHRLLSKQDFSRYALDFLVFANSFLEARYNRLGGLMKLVPSPAKYTRRGVEADTYWYVSSYANPHPFEANSVF HLLDPDINQEIYGVPEYLASLNSTWLNEAATLFRRKYYLNGSHAGFILYMNDAAHKQEDIDALRKALKESKGPGNFRNLF MYAPAGKKDGIQVIPLAEVAAKDEFASIKNVTRDDQLAMQRVPPQLMGILPNNTGGFGDVEKAARVFAINELAPLQERLM EINDWVGEEVVRFKPYELLAKQE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY4628 | NP_458710.1 | probable capsid portal protein | Not tested | SPI-7 | Protein | 4e-114 | 66 |
| t4321 | NP_807917.1 | capsid portal protein | Not tested | SPI-7 | Protein | 4e-114 | 66 |
| unnamed | ABR13463.1 | predicted capsid packaging protein | Not tested | PAGI-6 | Protein | 4e-89 | 56 |
