Gene Information

Name : YPK_1814 (YPK_1814)
Accession : YP_001720558.1
Strain : Yersinia pseudotuberculosis YPIII
Genome accession: NC_010465
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 2013221 - 2014111 bp
Length : 891 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ypm:YP_2228 ATP-binding transport protein

DNA sequence : 
ATGAGCCACCCTGTTTTTGTCCGCCCTGAGCTGGTAGTGGATAACGTCACTGTCACTTATAACAATGGTCATACTGCCAT
TTATGACGCCAGTTTTTCACTAACTGGTGGGACGATCTGTGCACTGGTAGGTGTTAATGGCAGCGGTAAATCGACCTTAT
TTAAAAGCATTATGGGGTTAGTCAAGCCCAGTGTGGGCAAAGTGGAACTGAGTCACAAACCTATCAGTCATGCACTAAAA
CAAAATACGATTGCTTATGTACCACAGACAGAAGATGTCGATTGGAACTTCCCTGTGCTTGTGGAAGATGTCGTGATGAT
GGGCCGTTACGGTAAAATGAATTTTCTACGAATTCCCAGTCGTGAAGACAAAGCCATTGTGAATAAATCCATTGAACGAG
TTGGGTTAACGGCATTGCGTTCACGGCAAATTGGTGAACTGTCTGGTGGCCAGAAAAAACGTGTTTTCTTGGCCCGAGCC
CTTGCCCAACAAGGCACACTCTTACTACTGGATGAGCCATTTACCGGCGTTGACGTCAAAACTGAAAATGCCATTATTGA
GTTACTGCAATCTCTACGTGACGAAGGCCATCTGATTCTGGTTTCAACTCATAACCTAGGCAGCGTGCCGGAATTTTGTG
ATCACGTCATCCTAATTAATCAGACGGTGCTGGCCGCGGGCCCAATTGAAACGACATTTACCCAGAAAAACCTCGAGATG
ACCTTTGGCGGGGTATTGCGCCATATCAATCTGTCGGGGACGGCACTGCATGATGATAATGATCCGCGCACCGTCACCGT
AATAACTGATGATGAACGCCCCGCAGTATTTTATGGTCATACTAAAAATGATCCGCCTGCACAAAGCCAGTCAAAGGAGC
AAAATTCCTGA

Protein sequence : 
MSHPVFVRPELVVDNVTVTYNNGHTAIYDASFSLTGGTICALVGVNGSGKSTLFKSIMGLVKPSVGKVELSHKPISHALK
QNTIAYVPQTEDVDWNFPVLVEDVVMMGRYGKMNFLRIPSREDKAIVNKSIERVGLTALRSRQIGELSGGQKKRVFLARA
LAQQGTLLLLDEPFTGVDVKTENAIIELLQSLRDEGHLILVSTHNLGSVPEFCDHVILINQTVLAAGPIETTFTQKNLEM
TFGGVLRHINLSGTALHDDNDPRTVTVITDDERPAVFYGHTKNDPPAQSQSKEQNS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-79 63
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 2e-79 63
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 3e-80 63
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 3e-80 63
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-79 63

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPK_1814 YP_001720558.1 ABC transporter-like protein BAC0440 Protein 3e-140 100
YPK_1814 YP_001720558.1 ABC transporter-like protein BAC0350 Protein 8e-80 63
YPK_1814 YP_001720558.1 ABC transporter-like protein BAC0400 Protein 2e-46 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPK_1814 YP_001720558.1 ABC transporter-like protein VFG0526 Protein 7e-80 63