Gene Information

Name : YPK_1481 (YPK_1481)
Accession : YP_001720227.1
Strain : Yersinia pseudotuberculosis YPIII
Genome accession: NC_010465
Putative virulence/resistance : Virulence
Product : Hcp1 family type VI secretion system effector
Function : -
COG functional category : S : Function unknown
COG ID : COG3157
EC number : -
Position : 1639755 - 1640324 bp
Length : 570 bp
Strand : +
Note : TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: yps:YPTB2664 hypothetical protein

DNA sequence :

ATGTGCCTCCGTATTTATATGGGGTCTTCCTACACTCGATGTTTGGCATTGAGTGACATTTATAAAAGTGCTAGAGAGGA
TATTATGGCGCAAGATATGTTTATCAAAATTGATGGTATTGAAGGTGAGTCTTTGGATGCCAATCACAAAAACGAAATCC
AGGTATTAGCTTGGAACTGGGATGTTGCTCAACACTCGAATATGCACAGCGGTTCAGGTGGCGGTTCAGGTAAAGCCTCT
GTTTCAGATTTTTGCTTCGCACATTATATCGATAAAGCTAGCCCGAACTTATTGAGCTATTGCTTGCTGGGTAAGCACAT
TAAAAATGTTCAGTTCGTACTGCGTAAAGCCGGTGGCGATCCGCTGGAATATCTGACAATTAAATTTACCGATGTCATCA
TTACTCGTGTTGATATGGCGGGTTCTTTGGAAGATGAAACGCGTCCACGTGAAGAAATTCGTTTCTCATTCACTAAGATG
ACTCAGGACTATGTTATGCAGAATGCTGAAGGCCATAAATCTGGCGTTATTTCTGCTAACTACGATGTTAAAGCTAACAT
GCACAGCTAA

Protein sequence :

MCLRIYMGSSYTRCLALSDIYKSAREDIMAQDMFIKIDGIEGESLDANHKNEIQVLAWNWDVAQHSNMHSGSGGGSGKAS
VSDFCFAHYIDKASPNLLSYCLLGKHIKNVQFVLRKAGGDPLEYLTIKFTDVIITRVDMAGSLEDETRPREEIRFSFTKM
TQDYVMQNAEGHKSGVISANYDVKANMHS

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
STY0302	NP_454882.1	conserved hypothetical protein	Not tested	SPI-6	Protein	8e-37	55

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
YPK_1481	YP_001720227.1	Hcp1 family type VI secretion system effector	VFG2071	Protein	5e-21	42