Gene Information

Name : YPK_1304 (YPK_1304)
Accession : YP_001720055.1
Strain : Yersinia pseudotuberculosis YPIII
Genome accession: NC_010465
Putative virulence/resistance : Unknown
Product : Hcp1 family type VI secretion system effector
Function : -
COG functional category : S : Function unknown
COG ID : COG3157
EC number : -
Position : 1435392 - 1435871 bp
Length : 480 bp
Strand : -
Note : TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: ypi:YpsIP31758_1198 hypothetical protein

DNA sequence :
ATGGCTAACTTAATTTATGCAAGTATTGATGGCGAAAAACAAGGGTTGATATCGTCTGGCTGCTCAACGCTTGACTCTAT
TGGTAATCGATGTCAGTTGGGGCATGAGGATCAAATATATGTCTATGGGTTTGATCATAATATAGCCAGAGCACAAAATG
TCGCGCATCAGCCAATCATAATAACCAAACCTATTGACAAATCATCGCCTTTGCTAGGGATGTCTATATCAAATAATGAA
AAACTACAAATAGTATTATATATGTACAGGGTAAATTCATCGGGTTCCTTAGAGGTGTTTTATACAATAAAACTGAAAGA
TGCCTATATCTCAAATATTTCTCAACATTGCCCAAATGCGCTGACACATAATGATATTCAGCCCTATGAAATCATATCAA
TTTCGTACAAAAGCATTGATTGGGAGCACAATATTTCTGGGACATCTGGCTATAGCATATGGGATGAAAGAGTTTATTGA

Protein sequence :
MANLIYASIDGEKQGLISSGCSTLDSIGNRCQLGHEDQIYVYGFDHNIARAQNVAHQPIIITKPIDKSSPLLGMSISNNE
KLQIVLYMYRVNSSGSLEVFYTIKLKDAYISNISQHCPNALTHNDIQPYEIISISYKSIDWEHNISGTSGYSIWDERVY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec32 YP_851413.1 hypothetical protein Not tested PAI II APEC-O1 Protein 7e-34 51
aec32 AAQ96726.1 Aec32 Not tested AGI-1 Protein 5e-34 51
orf23 AAO17189.1 Orf23 Not tested tcd island Protein 2e-35 46