Gene Information

Name : Daud_1753 (Daud_1753)
Accession : YP_001717881.1
Strain : Candidatus Desulforudis audaxviator MP104C
Genome accession: NC_010424
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1847956 - 1848738 bp
Length : 783 bp
Strand : -
Note : TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: chy:CHY_1005 flagellar biosynthetic protein FliP

DNA sequence : 
ATGAACCGGACGATGTTTATATTGGCGGCCGCCGTCGGACTGGCGGCTGGGGACAGTCCCCTTTGGGCCTTAGGGGGACT
GTCCCCCTCGGCCGCCTGGGCCCAGCCGGTGCCCATTCCGAGCATCGAGCTGACCATCGGCGAACCGGAATCGCCGGCCG
AAGTGGTCTCGAGCGTCCGGCTCTTGCTCTTTCTTACCGTAATCTCGCTTCTCCCGGCTTTCCTGGTGATGGTTACGTCT
TTTACCCGGATCGTGGTGGTGCTCGCGTTCCTGCGCGCCGGGCTGGGCATCTACCAGGCGCCGCCGGGTTCGGTACTGAT
CGGCCTGGCCCTGTTCCTGACCGTGTTCATCATGGCGCCGGTTTACGCGCAGGTCAACGAGCAAGCCATCGAGCCGTTTC
TAAGGGGAGAGATCGACCAGGTGGAGGCCCAGGAAAGGGCGGCGGGGCCGCTGCGGGAGTTCATGCTCCGGCACACCCGG
GAAAAGGACCTGGACCTTTTCGTGCGCATGGCCGAAATCGAAAACCCGGTGCCAAACGAACTGCCGCTCACGGTGGTCAT
CCCGGCCTTCATCATCAGCGAATTGAAGACGGCGTTTACAATGGGCTTTATGCTGTACTTGCCGTTTTTGATCATCGACA
TGGTGGTGGCCAGCATCCTGCTCTCGATGGGCATGTTCATGCTGCCGCCGGTCATGATTTCACTGCCGTTCAAACTCCTT
TTGTTTGTGCTGGTGGACGGCTGGTATCTGGTGGTCCGGTCCCTGGTGGAGAGCTTCGCCTGA

Protein sequence : 
MNRTMFILAAAVGLAAGDSPLWALGGLSPSAAWAQPVPIPSIELTIGEPESPAEVVSSVRLLLFLTVISLLPAFLVMVTS
FTRIVVVLAFLRAGLGIYQAPPGSVLIGLALFLTVFIMAPVYAQVNEQAIEPFLRGEIDQVEAQERAAGPLREFMLRHTR
EKDLDLFVRMAEIENPVPNELPLTVVIPAFIISELKTAFTMGFMLYLPFLIIDMVVASILLSMGMFMLPPVMISLPFKLL
LFVLVDGWYLVVRSLVESFA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 6e-32 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 4e-32 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-32 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 4e-32 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-29 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-31 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-31 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-32 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-32 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 9e-33 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 9e-33 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 6e-33 41
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-31 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-32 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-32 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-27 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-27 41
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-27 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Daud_1753 YP_001717881.1 flagellar biosynthetic protein FliP VFG2338 Protein 2e-50 55
Daud_1753 YP_001717881.1 flagellar biosynthetic protein FliP VFG1259 Protein 2e-57 50
Daud_1753 YP_001717881.1 flagellar biosynthetic protein FliP VFG2494 Protein 2e-52 50
Daud_1753 YP_001717881.1 flagellar biosynthetic protein FliP VFG2016 Protein 8e-54 49
Daud_1753 YP_001717881.1 flagellar biosynthetic protein FliP VFG0044 Protein 2e-35 43
Daud_1753 YP_001717881.1 flagellar biosynthetic protein FliP VFG0519 Protein 4e-33 41