Gene Information

Name : CMS_0930 (CMS_0930)
Accession : YP_001709679.1
Strain : Clavibacter michiganensis ATCC33113
Genome accession: NC_010407
Putative virulence/resistance : Virulence
Product : Fe uptake system permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 973505 - 974275 bp
Length : 771 bp
Strand : +
Note : -

DNA sequence : 
ATGACGCTCGAGGCGCACGGCGTCAGCTGGTCGCGCGGCGGCCCGCTCGTGGTCGACGGCGTCACGCTCGAGCCCGCGCC
CGGATCCACGGTGGGGCTGCTCGGGCCGAACGGCTCGGGCAAGTCGTCGCTGCTCAAGCTGCTGCAGGGGGCGGCGTCGC
CCGACTCCGGCCGCGTGACGCTCGACGGCGCCGACCTCGCGGGGATCCGCCGCCGCGACGTCGCCCGCCGGGTCGCGACC
GTGACGCAGCACGGCGAGACCGAGGTCGACATCGTGGTGCGCGACGTCGTGCGCCTCGGCCGCACGCCGTACCGCACGCT
GCTCGGCGGCGACACCGCGGAGGACCAGGCGGCCATCGACCGCGCGATCGCGCACGTCGGCCTGGAGGACAAGGCCGACC
GCGCATGGCGGACGCTGTCCGGCGGCGAGCGGCAGCGGGCGCACATCGCCCGTGCCCTCGCGCAGGAGCCGCGCGAGCTG
CTGCTCGACGAGCCGACCAACCACCTCGACATCCGCCACCAGCTGGAGCTGCTCGCGCTCGTGCGCGACCTGCCGGTGAC
CACCGTGATCGCGCTGCACGACCTCAACCTCGCCGCGATGTACTGCGACGCCGTGCTCGTGCTGAGGGCGGGGCGCGTGG
TGGCGGGCGGGGATCCGCGCGAGGTGCTGACGCCCGAGCTCATCGCCGACGTCTACGGGGTGCGCGCGCGGGTCGCGCAC
GACGAGGCAGCCGGCTGCCCGCGCGTGCTGTTCGACGCGGCGCCGCTCTAG

Protein sequence : 
MTLEAHGVSWSRGGPLVVDGVTLEPAPGSTVGLLGPNGSGKSSLLKLLQGAASPDSGRVTLDGADLAGIRRRDVARRVAT
VTQHGETEVDIVVRDVVRLGRTPYRTLLGGDTAEDQAAIDRAIAHVGLEDKADRAWRTLSGGERQRAHIARALAQEPREL
LLDEPTNHLDIRHQLELLALVRDLPVTTVIALHDLNLAAMYCDAVLVLRAGRVVAGGDPREVLTPELIADVYGVRARVAH
DEAAGCPRVLFDAAPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 1e-30 49
phuC YP_005682167.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 4e-19 44
phuC YP_005684259.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 4e-19 44
cpfrc_01918 YP_003784318.1 hypothetical protein Not tested PiCp 7 Protein 4e-19 44
phuC YP_005686351.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 7e-19 43
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 5e-17 41
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 6e-19 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CMS_0930 YP_001709679.1 Fe uptake system permease BAC0164 Protein 4e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CMS_0930 YP_001709679.1 Fe uptake system permease VFG0925 Protein 2e-19 43
CMS_0930 YP_001709679.1 Fe uptake system permease VFG1042 Protein 3e-19 41