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Name : kdpB (CMS_0461) Accession : YP_001709236.1 Strain : Clavibacter michiganensis ATCC33113 Genome accession: NC_010407 Putative virulence/resistance : Unknown Product : cation transport ATPase component Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG2216 EC number : 3.6.3.12 Position : 496219 - 498372 bp Length : 2154 bp Strand : - Note : - DNA sequence : ATGACCGTCCTGACCACCCCCGAGGCGGACACCGCAGCGGCTCCCGCCGCGACGCGCGCCCGGGCCATCGACGCCCGGCA GCTCGCCGAGGCGCTCCCCGGCGCGTTCCGGAAGCTCGACCCGCGCCTCATGTGGAAGAACCCGGTGATGCTGATCGTCG AGGTCGGCGCCGCGTTCACCACCGTGCTCGCGATCGCCGAGCCCTTCACGGGCGGCGCGGGATCCTCCGGCGGCAGCGCC GTGCCCGCGACCTTCACGGCCGGGATCGCCCTGTGGCTCTGGCTCACGGTCGTCTTCGCGAACCTCGCGGAGTCGGTGGC CGAGGGCCGCGGAAAGGCGCAGGCCGACAGCCTCCGCAAGACCCGGACCAGCACGATGGCGCACGTCGTCGCGTCCGACG ACCAGGCGGGCGATCCCGGCGCCGAGCGCGCCGAGCTCCGCGAGGTCTCGAGCGCCGACCTCACCCTCGGCGACACGGTC GTGGTGGTCGCCGGGGAGTCGATCCCGGGCGACGGCGACGTCGTGTGGGGCATCGCCTCCATCGACGAGTCGGCCATCAC GGGCGAGTCGGCCCCCGTCATCCGCGAATCGGGCGGCGACCGCAGCGCCGTCACGGGCGGCACGCGGGTGCTGAGCGACC GGATCGTCGTGCGCATCACCTCGAAGCCCGGCGAGACCTTCGTCGACCGCATGATCGGCCTCGTCGAGGGCGCGTCGCGC CAGCGCACGCCGAACGAGATCGCGCTGAACATCCTGCTGGCGAGCCTCACGATCGTCTTCGTGATCGTGGCGCTCACGCT CAACCCGATCGCCTCCTACTCGGCGGCGACCGTGAGCGTGCCGGTGCTCATCGCGCTGCTCGTCTGCCTGATCCCGACCA CCATCGGCGCCCTCCTCTCCGCCATCGGCATCGCCGGCATGGACCGGCTCGTGCAGCGCAACGTGCTCGCGATGTCGGGC CGCGCGGTCGAGGCCGCCGGCGACGTCACGACGCTGCTGCTCGACAAGACCGGCACCATCACGTACGGCAACCGCCGCGC CAGCGAGCTGATCCCCGTGGGCGGCGTGACGGGCGAGGAGCTCGCCCGGGCCGCGGCCATGTCGTCGCTCGCGGATCCGA CGCCGGAGGGATCCAGCGTCGTCGACCTCGCGGTCGCGCAGGGCCTCGACACGGTCACGCTGCCGCGCGGTGTCGACGTG CCCTTCACCGCGCAGACCCGCATGTCGGGCGTCGACCTGCCCGACGGCCGCATCGTCCGCAAGGGCGCGTCGTCCGCCGT GTTCGCCTGGATCGAGGAGGGCGGCCGCGCGCTGCCGCAGCTGGTCCGCGACGAGCTCACCCGCACCGTCGAGGCCGTGT CGAACGGCGGCGGCACCCCGCTCGTCGTCGCGACCAAGGACGCCGACGGATCCGGCCGCGTGCTCGGCGTCGTGCACCTC AAGGACGTCGTGAAGGACGGCCTGAAGGAGCGCTTCGCGGAGCTGCGGGCGATGGGGATCCGGACGGTGATGATCACGGG CGACAACCCGCTCACCGCCCGCGCCATCGCCGCCGAGGCCGGGGTCGACGACCACCTCGCCGAGGCGACGCCCGAGGACA AGCTCGCGCTCATCCGCAAGGAGCAGGAGGGCGGCCGCCTGGTCGCCATGACCGGCGACGGCACCAACGACGCGCCCGCG CTCGCGCAGGCCGACGTGGGCGTCGCGATGAACACGGGCACCTCGGCCGCGAAGGAGGCCGGCAACATGGTCGACCTCGA CTCGGACCCGACCAAGCTCATCGACATCGTCCGGATCGGCAAGCAGCTGCTCATCACGCGCGGCGCGCTCACCACGTTCT CCATCGCCAACGACATCGCCAAGTACTTCGCGATCATCCCGGCGATGTTCACGGGCGTCTTCCCGCAGCTCGCGGTGCTC AACGTGATGCAGCTGCACTCGCCGGCGTCCGCGATCCTCTCCGCGATCGTCTTCAACGCGCTGATCATCGTGGCGCTCAT CCCGCTGGCCCTCCGCGGCGTCAAGTACCGGCCGCTCAGCGCCTCCAAGGTGCTCAGCCGGAACCTGCTCGTCTACGGGG TCGGCGGCGTGATCGCGCCGTTCATCGGCATCAAGCTCGTCGACCTCGTCGTCAGCCTGATCCCCGGCTTCTGA Protein sequence : MTVLTTPEADTAAAPAATRARAIDARQLAEALPGAFRKLDPRLMWKNPVMLIVEVGAAFTTVLAIAEPFTGGAGSSGGSA VPATFTAGIALWLWLTVVFANLAESVAEGRGKAQADSLRKTRTSTMAHVVASDDQAGDPGAERAELREVSSADLTLGDTV VVVAGESIPGDGDVVWGIASIDESAITGESAPVIRESGGDRSAVTGGTRVLSDRIVVRITSKPGETFVDRMIGLVEGASR QRTPNEIALNILLASLTIVFVIVALTLNPIASYSAATVSVPVLIALLVCLIPTTIGALLSAIGIAGMDRLVQRNVLAMSG RAVEAAGDVTTLLLDKTGTITYGNRRASELIPVGGVTGEELARAAAMSSLADPTPEGSSVVDLAVAQGLDTVTLPRGVDV PFTAQTRMSGVDLPDGRIVRKGASSAVFAWIEEGGRALPQLVRDELTRTVEAVSNGGGTPLVVATKDADGSGRVLGVVHL KDVVKDGLKERFAELRAMGIRTVMITGDNPLTARAIAAEAGVDDHLAEATPEDKLALIRKEQEGGRLVAMTGDGTNDAPA LAQADVGVAMNTGTSAAKEAGNMVDLDSDPTKLIDIVRIGKQLLITRGALTTFSIANDIAKYFAIIPAMFTGVFPQLAVL NVMQLHSPASAILSAIVFNALIIVALIPLALRGVKYRPLSASKVLSRNLLVYGVGGVIAPFIGIKLVDLVVSLIPGF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kdpB | NP_814334.1 | potassium-transporting ATPase subunit B | Not tested | Not named | Protein | 1e-165 | 59 |
| ef0088 | AAM75291.1 | EF0088 | Not tested | Not named | Protein | 9e-166 | 59 |
| SAR0071 | YP_039539.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 3e-154 | 56 |
| kdpB(SCCmec) | NP_370597.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 3e-154 | 56 |
| kdpB | NP_373310.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 3e-154 | 56 |
| kdpB | YP_190029.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 3e-154 | 56 |
| kdpB | BAA82181.1 | potassium-transporting ATPase(B chanin) | Not tested | Type-II SCCmec | Protein | 2e-154 | 56 |
| kdpB | YP_251949.1 | potassium-transporting ATPase subunit B | Not tested | SCCmec | Protein | 9e-154 | 56 |
