Gene Information

Name : CMS_0335 (CMS_0335)
Accession : YP_001709116.1
Strain : Clavibacter michiganensis ATCC33113
Genome accession: NC_010407
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 364308 - 365240 bp
Length : 933 bp
Strand : +
Note : -

DNA sequence : 
GTGAGGCTAACCTCACCTATCGTGACCTCCCTCGCCTCGACCGCTCCCATCGCGCGCGCCGGGAACCGGGATCCGGTGCC
GGGATCACCCGCCGCCTCCGCCCTCGAGGCCCGCGACATCACGGTCGCGTACGGCGACACGGAGGTCGTGCACGGCGCCG
GGCTCGAGATCCGGCCGGGCTGCGTCACGGCGCTCGTCGGCCCGAACGGCAGCGGCAAGTCGACGCTGCTGCGCACGATG
GCGCGGCTCCAGGCGGCGCGCTCCGGTTCGCTCGTGCTGCGCGAGGAGAGCACCGGCGGCGCTGGCGAGCACGAGTCCGA
CGCCCTCGACCTCTCCCTCCGCCGCTTCGCGCGCCGCGTCGCCCTCCTCACCCAGGGCCGCCCGACGCCCGGCGGCCTCA
GCGTCCGCGACGTCGTCGAGTTCGGTCGCTACCCGCACCGCGGCCGCTTCGGCGGGGCGGATCCCGAGGGCCGCGCCGCC
GTGGATCGCGCGCTCGACCTCACGGGCCTCGCCGCCCTCGCCGACCGCGGCGTCGACCAGCTCTCCGGCGGCCAGCTCCA
GCGCGTCTGGCTCGCGAGCTGCCTCGCCCAGGAGACGGGCGTGCTGCTCCTCGACGAGCCCACCACGTACCTCGACCTCC
GCTACCAGGTCGAGCTCCTCGACCTGGTGCGCGACCTCGCCGACGACGCATCGATCGCCGTCGGCGTCGTCCTCCACGAC
CTCGATCAGGCCGCCGCGCTCGCCGACACCGTCGCGCTGCTCTCCGACGGCCGGATCGTCAAGACCGGCACCCCATCCGA
GGTGCTGACCCCCGACCTCCTCACCGAGGTCTACGGCATCCCCGTCGAGGTCCACGCGGACCCGACGACGGGCAGCCTGC
GCACCCGCGCGGTCGCCCGCCACCACCACAGGAACGAGAGGCTCCACCCGTGA

Protein sequence : 
MRLTSPIVTSLASTAPIARAGNRDPVPGSPAASALEARDITVAYGDTEVVHGAGLEIRPGCVTALVGPNGSGKSTLLRTM
ARLQAARSGSLVLREESTGGAGEHESDALDLSLRRFARRVALLTQGRPTPGGLSVRDVVEFGRYPHRGRFGGADPEGRAA
VDRALDLTGLAALADRGVDQLSGGQLQRVWLASCLAQETGVLLLDEPTTYLDLRYQVELLDLVRDLADDASIAVGVVLHD
LDQAAALADTVALLSDGRIVKTGTPSEVLTPDLLTEVYGIPVEVHADPTTGSLRTRAVARHHHRNERLHP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 4e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CMS_0335 YP_001709116.1 ABC transporter ATP-binding protein BAC0164 Protein 2e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CMS_0335 YP_001709116.1 ABC transporter ATP-binding protein VFG1042 Protein 2e-28 41
CMS_0335 YP_001709116.1 ABC transporter ATP-binding protein VFG0925 Protein 3e-28 41