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Name : xerD (CMS_1251) Accession : YP_001709989.1 Strain : Clavibacter michiganensis ATCC33113 Genome accession: NC_010407 Putative virulence/resistance : Unknown Product : site-specific tyrosine recombinase XerD Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 1311938 - 1312924 bp Length : 987 bp Strand : + Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d DNA sequence : GTGACCGACGCGGCCGACGGACCCGGGGGAGCGGCACCCGACACCGCGCCCGAGGTCCCCGTCGCGCTGCGCCGGGCCGT CGACCGGTGGCTCCGGCACGTCGAGGTGGAGCGCGGCCTGTCCCGCAACACCATCCAGGCCTACCGCCGCGACCTCGCGC GGTACACGGCGCACCTCGCGGCGGAGGGCGTGGCGGATCCGGCCGATGCGACGAGCGCGCACGTCGCCGGCTTCGCCCAG CGCGTCCGCGACCCCGAGCAGGGCGGCCTCACGGCGTCGTCGCTTGCGCGGATGCTCTCGAGCGTGCGGAGCTTCCACCG GTTCCTGGTGGAGGAGGGCATCGTCGAGGTCGACGTGTCCGCCGAACAGAAGCCGCCCAAGCTGCCGAGCCGCCTGCCGA AGGCCGTGTCGGTCGAGACGATGGGGCGGATCCTCGACGCGACCGACGGCGACGAGCCCCTCCGCGTCCGCGACAAGGCC CTGCTCGAGCTGCTGTACGCGACGGGCGCGCGGGTCAGCGAGATCACGGCGCTCACCGTGGACGACGTGCTGGGGCCCGA CGGCGCCGCAGCCGAGATCGTGCGGGTGGTGGGCAAGGGCGGCAAGCAGCGGATCGTGCCCGTCGGGTCCTTCGCGCGCC GTGCCGTCGACGCCTACCTCGTGCGCGTCCGCCCGATCCTCGCCGCGCGCGGATCCGCGACTCCGGCGCTCTTCCTCGGG CTCCGCGGACACGCGCTGTCTCGGCAGAACGCGTGGCTCGTGATCAAGGCGGCCGCCGAGCGCGCCGGCGTCACGGAGGA GATCTCGCCCCACATCTTCCGGCACTCGTTCGCGACGCACCTCATCGCGGGCGGCGCCGACGTGCGCGTCGTGCAAGAGC TGCTCGGTCACTCGTCGGTCGCGACCACGCAGATCTACACGCGCGTGACCGTCGACACCCTGCGCGACGTCTACACGACC GCGCACCCGCGTGCCCGCCGGGCGTGA Protein sequence : MTDAADGPGGAAPDTAPEVPVALRRAVDRWLRHVEVERGLSRNTIQAYRRDLARYTAHLAAEGVADPADATSAHVAGFAQ RVRDPEQGGLTASSLARMLSSVRSFHRFLVEEGIVEVDVSAEQKPPKLPSRLPKAVSVETMGRILDATDGDEPLRVRDKA LLELLYATGARVSEITALTVDDVLGPDGAAAEIVRVVGKGGKQRIVPVGSFARRAVDAYLVRVRPILAARGSATPALFLG LRGHALSRQNAWLVIKAAAERAGVTEEISPHIFRHSFATHLIAGGADVRVVQELLGHSSVATTQIYTRVTVDTLRDVYTT AHPRARRA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00307 | YP_008207772.1 | Site-specific recombinase XerD | Not tested | AbaR25 | Protein | 1e-38 | 41 |
| BJAB0868_00311 | YP_008211637.1 | Site-specific recombinase XerD | Not tested | AbaR26 | Protein | 1e-38 | 41 |
