Gene Information

Name : CMS_1201 (CMS_1201)
Accession : YP_001709938.1
Strain : Clavibacter michiganensis ATCC33113
Genome accession: NC_010407
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1254938 - 1255645 bp
Length : 708 bp
Strand : +
Note : -

DNA sequence :
ATGAGCCTGATCCGCCTGGAGCAGGTGACCCGAACGGTCGAGCGGCCGGACGACGAGCCGCTGACGATCCTGCACGGCGT
CGACCTCGACGTGTCCGTCGGCGACCACGTCTCGATCGTGGGCCGGTCGGGATCGGGCAAGTCGACGCTGCTGAACATCC
TGGGTCTGCTCGACACCCCCACCACCGGCGAGGTCTTCCTCGACGACGTGCCCATGGCCCGCGTCTCCGGATCCCGGCGT
GACCGGGCCCGCGGCGGCGACATCGGCTTCATCTTCCAGCAGTTCAACCTGCTGCAGGGACGCACGGCCCGCGAGAACGT
GATGACACCGCTGCTCTACTCGACCGGCCGCACGTTCTGGCGGCGCGCGTCGATCGCGGCCGACATGCTCGAGCGGGTCG
GCCTCGGCCACCGCATCGACTCCATGCCGGAGACCATGTCCGGCGGCGAGCAGCAGCGCGTCGCCATCGCCCGTGCCCTC
GTGCGCTCGCCGCGGCTGATCCTCGCGGACGAGCCGACCGGCGCCCTCGACATCGAGACCGGCGCCACCGTGATGACCCT
GCTCGCCGAGGTCGCGCACGCGTCCGGCGCGGCGCTGGTGACCATCACGCACGACCCGACCGTCGCGGCCCGCGCGGATC
GGCACCACCGCCTCGAGGCGGGTGTCCTCGCGCCCGCCGAGGCCCTCACCCGCGGGGTGCTCGCATGA

Protein sequence :
MSLIRLEQVTRTVERPDDEPLTILHGVDLDVSVGDHVSIVGRSGSGKSTLLNILGLLDTPTTGEVFLDDVPMARVSGSRR
DRARGGDIGFIFQQFNLLQGRTARENVMTPLLYSTGRTFWRRASIAADMLERVGLGHRIDSMPETMSGGEQQRVAIARAL
VRSPRLILADEPTGALDIETGATVMTLLAEVAHASGAALVTITHDPTVAARADRHHRLEAGVLAPAEALTRGVLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-29 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-29 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-29 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-29 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CMS_1201 YP_001709938.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 1e-40 43
CMS_1201 YP_001709938.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 2e-27 42
CMS_1201 YP_001709938.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 4e-25 42