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Name : CMS_0112 (CMS_0112) Accession : YP_001708900.1 Strain : Clavibacter michiganensis ATCC33113 Genome accession: NC_010407 Putative virulence/resistance : Virulence Product : Clp family ATP-binding protease Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 130984 - 133494 bp Length : 2511 bp Strand : + Note : - DNA sequence : ATGTTCGAGAGATTCACCGACCGCGCTCGTCGCGTCGTCGTCCTGGCCCAAGAAGAGGCCAAGATGCTCAACCACAACTA CATCGGGACCGAGCACATCCTGCTCGGACTCATCCACGAGGGCGAAGGCGTGGCCGCCAAGGCCCTGGAGTCGCTCGGCA TCTCCCTCGATGCCGTCCGCGAACAGGTCCAGGACATCATCGGCCAGGGCCAGCAGCAGCCCACGGGTCACATCCCGTTC ACGCCGCGCGCGAAGAAGGTCCTGGAGCTGTCGCTCCGCGAGGCCCTCCAGCTCGGCCACAACTACATCGGCACCGAGCA CATCCTGCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTGCTCGTCAAGCTCGGCGCCGACCTCAACCGCG TGCGCCAGCAGGTCATCCAGCTCCTGTCCGGATACCAGGGCAAGGAGGCGGTCGCCGTCGGCGGCGAGGCGCAGCAGAGC CAGCAGGCTGGCTCCACGGTCCTCGACCAGTTCGGGCGCAACCTCACGCAGGCGGCGCGCGACGGCAAGCTCGACCCCGT CATCGGCCGCGAGAAGGAGATCGAGCGCGTGATGCAGATCCTGTCGCGCCGCTCCAAGAACAACCCCGTCCTCATCGGCG AGCCCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTGGCGCAGGCCATCGTCAAGGGCGACGTCCCGGAGACGCTGAAG GACAAGCAGCTCTACACGCTCGACCTCGGCTCGCTCATCGCCGGGTCCCGCTACCGGGGCGACTTCGAGGAGCGCCTCAA GAAGGTCACCAAGGAGATCCGCACGCGCGGCGACATCATCACCTTCATCGACGAGATCCACACCCTCGTCGGCGCGGGCG CCGCCGAGGGCGCGATCGACGCGGCCAGCATCCTCAAGCCGCTCCTCGCGCGCGGCGAGCTGCAGACCATCGGCGCCACC ACGCTGGATGAGTACCGCAAGCACTTCGAGAAGGACGCGGCCCTCGAGCGCCGCTTCCAGCCCATCCAGGTGCAGGAGCC CTCGCTGCCCCACACCATCAACATCCTCAAGGGCCTGCGCGACCGCTACGAGGCGTTCCACAAGGTGTCCATCACCGATG GCGCCATCGTCTCGGCCGCGAACCTGGCGGACCGCTACATCGCGGACCGCTTCCTGCCCGACAAGGCCATCGACCTGATC GACGAGGCCGGCGCGCGCCTGCGCCTCTCGATCCTGTCGGCGCCACCGGAGCTCCGCGAGTTCGACGAGCGCATCTCCAC GGTCCGCGTGGCCAAGGAGACCGCCATCGAGGACCAGGACTTCGAGAAGGCCGCGAGCCTGCGCGACGAGGAGAAGAACC TCCTGGGCGAGCGCCTCCGGCTCGAGAAGCAGTGGCGCTCGGGCGACGTCCGCACCACCGCCGAGGTCGACGAGGGCCTG ATCGCCGAGGTCCTGGCCCAGGCCACGGGCATCCCCGTGTTCAAGCTCACGGAGGAGGAGTCCTCGCGCCTCGTCTTCAT GGAGAAGGCCCTGCACCAGCGGGTCATCGGCCAGGAGGAGGCCATCTCGGCCCTGTCCAAGACCATCCGCCGCACCCGCG CCGGGCTGAAGGACCCCCGTCGTCCCTCGGGGTCGTTCATCTTCGCCGGCCCCACGGGCGTCGGCAAGACGGAGCTCGCG AAGGCGCTGGCGGAGTTCCTCTTCGACGACGAGGACGCCCTCATCTCGCTCGACATGAGCGAGTACGGCGAGAAGCACAC CGTGAGCCGCCTCTTCGGCGCCCCTCCCGGATTCGTCGGCTTCGAGGAGGGCGGCCAGCTCACCGAGAAGGTGCGCCGCA AGCCGTTCTCCGTGGTGCTCTTCGACGAGATCGAGAAGGCCCACCCGGACATCTTCAACTCGCTGCTCCAGATCCTGGAG GAGGGACGCCTGACGGATGGCCAGGGCCGCGTGGTCGACTTCAAGAACACGGTCATCATCATGACCACCAACCTCGGCAC CAAGGACATCACGGGCGCCCCGGTCGGGTTCCAGGTCGAGAACAACGCCGCGAACTCCTACGAGCGCATGAAGGGCAAGG TCAGCGAGGAGCTGAAGAAGAACTTCAAGCCCGAGTTCCTCAACCGCGTGGACGACACCATCGTGTTCCCGCAGCTGTCG AAGCCCGAGCTGCTCCAGATCGTCGACCTGTTCGTGAAGCGCCTGTCGGACCGCATGATGGACCGCGACCTCACGATCAC GCTCGAGACCGCCGCGAAGGAGCGCCTCATCGAGGTCGGCTTCGACCCGTCGCTCGGCGCGCGGCCCCTCCGCCGCGCGG TGCAGCACGAGATCGAGGACCGCCTGTCGGAGCGCATCCTGCAGGGCGAGCTCAACGCGGGCGACCACGTGCACGTGGAC TACGTGGACGACCAGTTCACGTTCGTCACCACGCAGCGCGAGGGCATCTCGGTCGCGGCCGGGATCGGCACGGGGACCGG CACGCCGGACCTCGCCATCACCAGCGAGTAG Protein sequence : MFERFTDRARRVVVLAQEEAKMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDAVREQVQDIIGQGQQQPTGHIPF TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKEAVAVGGEAQQS QQAGSTVLDQFGRNLTQAARDGKLDPVIGREKEIERVMQILSRRSKNNPVLIGEPGVGKTAVVEGLAQAIVKGDVPETLK DKQLYTLDLGSLIAGSRYRGDFEERLKKVTKEIRTRGDIITFIDEIHTLVGAGAAEGAIDAASILKPLLARGELQTIGAT TLDEYRKHFEKDAALERRFQPIQVQEPSLPHTINILKGLRDRYEAFHKVSITDGAIVSAANLADRYIADRFLPDKAIDLI DEAGARLRLSILSAPPELREFDERISTVRVAKETAIEDQDFEKAASLRDEEKNLLGERLRLEKQWRSGDVRTTAEVDEGL IAEVLAQATGIPVFKLTEEESSRLVFMEKALHQRVIGQEEAISALSKTIRRTRAGLKDPRRPSGSFIFAGPTGVGKTELA KALAEFLFDDEDALISLDMSEYGEKHTVSRLFGAPPGFVGFEEGGQLTEKVRRKPFSVVLFDEIEKAHPDIFNSLLQILE EGRLTDGQGRVVDFKNTVIIMTTNLGTKDITGAPVGFQVENNAANSYERMKGKVSEELKKNFKPEFLNRVDDTIVFPQLS KPELLQIVDLFVKRLSDRMMDRDLTITLETAAKERLIEVGFDPSLGARPLRRAVQHEIEDRLSERILQGELNAGDHVHVD YVDDQFTFVTTQREGISVAAGIGTGTGTPDLAITSE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 71 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CMS_0112 | YP_001708900.1 | Clp family ATP-binding protease | VFG0079 | Protein | 0.0 | 59 |
| CMS_0112 | YP_001708900.1 | Clp family ATP-binding protease | VFG0080 | Protein | 6e-154 | 53 |
| CMS_0112 | YP_001708900.1 | Clp family ATP-binding protease | VFG2084 | Protein | 2e-94 | 41 |
