|
Name : lysS (ABSDF2397) Accession : YP_001707649.1 Strain : Acinetobacter baumannii SDF Genome accession: NC_010400 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 2218504 - 2220033 bp Length : 1530 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACGCAACAAAACGCTCAATCGACTTCTGAACCAACTATTTCCGAAAACGATTTAATTGCACAGCGTCATGCCAAATT AAAGCAAATCCAAGATGTTGCAAAGGAAACTGGAAAGAGTCCTTGGCCAAATACATTCAAACGTGAACATTACGCTGCTG ATTTACAAGAACAATTTAAAGATCAGTCTAAAGAACAAATCGAAAGTGCTGAACATGTTTATGTAAAAGTTGCTGGCCGT GTCATGTTAAACCGTGGTTCTTTCATGGTGATTCAAGACATGACTGGTCGTATCCAATTATATGTTGACCGTAAGGGTTT ACCAAAAGATACGCTCGAAACTATTAAAGGTTTAGACCTTGGCGATATTATTGCTGCTGAAGGTTATATCGGTCGTTCTG GCAAAGGTGACTTATATGTACACCTTGAAGGTTTTGAACTTCTTACAAAATCGCTTCGTCCATTGCCGGATAAATTTCAT GGTTTGAACGACACAGAAGTTAAATATCGTAAGCGTTATCTTGACTTAATTGTGAATGAAGAAACGCGTAAGACTTTTGA AATTCGTGCCAAAGTCGTTGCAGGTATTCGCGCATTTTTAACCAATGAACGTTTCATGGAAGTTGAAACGCCAATGATGC ATGTGATTCCGGGTGGCGCGTCTGCACGTCCGTTTGAAACGCATCATAATGCTTTAGATATGCCATTATTCTTGCGTATC GCACCTGAGCTTTATTTAAAGCGTTTAGTAGTGGGTGGTTTTGAGCGTGTGTTCGAAATTAACCGTAACTTCCGTAATGA AGGGGTGTCAACACGTCATAACCCTGAATTTACCATGATCGAGTTTTATCAGGCATATGCTGATTATAAAGACTTGATGG CTTTAACTGAAAACATGCTTGAAAAGTTAGCTCTTGATATTTTAGGTACAACTGATGTGCCTTACCAAGGTGAAGTGTTT AGCTTTAAAGGACCATTCAAGAAAATCTCTATGTTTGATGCGATTTTGGAGAATAATCCGCAGTTCACGCCTGAAAATGT AGGCGATCGTGAATTCCTTGCAAAATTTGTTCGTGAGGAATTAAAAGAAGAAGTTAAACCTGGTTTTGGTTTAGGTAAGC TTCAAACAATCGTATTTGAAGAAACGGTTGAGACTAAACTTCGTCAGCCTACTTTTATTACTGAGTACCCAGCAGAGACT TCTCCACTTGCTCGCCGTAATGATGATAATCCGCACATTACTGATCGTTTTGAGTTCTTTATTGGTGGCCGTGAATTGGC AAACGGCTTTAGTGAGTTAAATGATCCGATTGATCAGGCTGAACGTTTCCAAGCGCAAGTTGCTGAAAAAGATGCTGGTG ATGATGAAGCAATGCATTACGATGCAGAGTTTGTTGAAGCACTTGAATATGGTTTACCTCCAACAGCGGGTGAAGGTATT GGTATTGACCGTTTGGTTATGCTTTTTGCAGATGCACCAAGTATTCGTGATGTGATTTTGTTCCCGCATATGCGTCGTAA AGAAGGTTAA Protein sequence : MTQQNAQSTSEPTISENDLIAQRHAKLKQIQDVAKETGKSPWPNTFKREHYAADLQEQFKDQSKEQIESAEHVYVKVAGR VMLNRGSFMVIQDMTGRIQLYVDRKGLPKDTLETIKGLDLGDIIAAEGYIGRSGKGDLYVHLEGFELLTKSLRPLPDKFH GLNDTEVKYRKRYLDLIVNEETRKTFEIRAKVVAGIRAFLTNERFMEVETPMMHVIPGGASARPFETHHNALDMPLFLRI APELYLKRLVVGGFERVFEINRNFRNEGVSTRHNPEFTMIEFYQAYADYKDLMALTENMLEKLALDILGTTDVPYQGEVF SFKGPFKKISMFDAILENNPQFTPENVGDREFLAKFVREELKEEVKPGFGLGKLQTIVFEETVETKLRQPTFITEYPAET SPLARRNDDNPHITDRFEFFIGGRELANGFSELNDPIDQAERFQAQVAEKDAGDDEAMHYDAEFVEALEYGLPPTAGEGI GIDRLVMLFADAPSIRDVILFPHMRRKEG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-128 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001707649.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-128 | 55 |
