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Name : MAB_2319c (MAB_2319c) Accession : YP_001703054.1 Strain : Mycobacterium abscessus ATCC 19977 Genome accession: NC_010397 Putative virulence/resistance : Unknown Product : Probable lysyl-tRNA synthetase 2 LysX Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 2372999 - 2376331 bp Length : 3333 bp Strand : - Note : Similar to Q25XU4_MYCVN 0.0 DNA sequence : GTGACATCCATCAAACCGGCAGTTGAACCACCCGCCCCGGATCATCCCGCTGTCACGGCGCTCCCGGGAATCGGTGCACG CCCGGCAGCGCGACCACCCGTAACCTCACGGTGGCGCTGGGTCCCGGCGTTCTTCGGCTGGTTTGTCGGCATCCAGGCGA TCCTGAACTTCCTGTCGAGCATCTCGCCATTCATTCGGATGGTGACGAAGCTGCCTCGCGAGTTCGTCGACGAATACCTG TTCGGTTGGCCCGACGGCAGCCTGTCCTGGGCTTTTGTACTGTCGCTACTGGCCGCCGCCCTGGCGGTGCGCAAGAGCAT CGCCTGGTGGGTGCTCTTGATCGACCTACTGGGACGGTCAGCACTAAACGTGGGCGGCTTCATAGAGCATCGTGACACCA CCGAGCTGATCGGTCTCGTCGTGCACGGCGCGTTCATCCTGTTGCTGCTGCTCGCGCGTAAGGAGTTCTACGCCAAGGTA CGCCGCGGTGCGACGGTCAAGGCGGCGCTGGTGCTGATCGCGGGGATGGCCGCCGGAACAGTCCTGGCATGGGGCCTGCT GGAACTCTTCCCCCGCACGCTTGTCCCCGGTGATCGTTTCTGGTGGGCACTCAATCGGGTGGCCGGCTTTTCGATCGCCT CACACCGCGATTTCGATGGTCTGCCCCCTCACTTCCTGAACTGGCTCTTCGGGTTATTCGGCGCGCTGGCCCTGATCGCC GCGGCCATCGTGTTGTTCCGCTCGCAACGAGCCGTCAACGCGCTGACCGGTGATGACGAATCTCTAATCCGCGGGCTCCT GGAGCGCTATGGGCAGGACGACTCCCTGGGTTATTTCGCGACGAGACGCGACAAGGCCGTCATCTTCGCGCCCAATGGCC GAGCGGCCGTGACATATCGGGTGGAAGTTGGCGTCTGCCTGGTCAGTGCCGATCCCATTGGGGACAAATCGGCTTGGGGC CAAGCCATTTCCGCATGGCTGCAGGTATGCGACGCTTACGGCTGGGCGCCGGCGGTCATGGGCGCCAGCGCCGAAGGTGC GCTGGCGTATCGCGAACATGGGCTCAACGCACTGGAACTCGGCGACGAGGCCATCTTGTACCCGCGCTCATTCTCGATTT CGGGTCCGCATATGGCCACGGTCCGGCAGGCGGTCAACCGCGCACGACGTTCGGGACTATCGGTGCGCATCCGCCGCCAT CGCGAACTGAGCGCCGAAGAGACGAAACAGATCATCGTCAATGCCGACCTGTGGCGTGATGGCAATACCGAGCGCGGCTT CTCGATGGCACTGGGACGGTTGGGGGATTCCACCGATGGCGACTGCCTGTTGGTTGAGGCGATCGATTCCACGGGCGATC CCGTCGCCATGCTGTCTCTCGTACCGTGGGGCACCAACGGGGTGTCCCTCGAACTCATGCGCCGCTCGCGTCAATCACCC AACGGCACTATCGAATTCATGGTCACGGAGCTGCTCACACGCGCAGAGGGTATGGGGATCACCCGCGTTTCCCTCAACTT TGTGATGTTTCGCTCGGTCTACGCCGACGGCTCCCGAATCGGAGCGGGCCCGGTACTTCGACTGTGGCGCTCGGTGCTGA TGTTCGCCTCACGGTTCTGGCAGTTCGAGCAGTTATATCGCTCCAATGTGAAGTATCAGCCGGAATGGGTGCCCCGGTTC GCCTGCTACGAAGACGCCCGGCTCATCCCCCGCATCGGCATCGCGTCGGTGATCGCCGAAGGCTTCCTGGTGCTGCCCTT CGGCAACCGCGACAAGCCGAGGCACACCGGCCAGTACAGCGCGGTTCCACAGGCCATCGTGGCCACGGGCCTGCTGCATC ACGATGGCAGCACACCCGAGCTACTGCCCCAGACAGCACCTCAACAGCGCGTACCGGAGCAGGTCAAGGTTCGACTGGGC AAGCTGGCCGCCTTACAGGAGAAGGGAATCGACACATACCCGGTGGGATCGCCACCGTCCCATACCGTGGCCGAGGCGCT TGCCGCACCCGACGGTAGCGAAGTGGTCATCAGCGGGCGATTGTTGCGAATCCGCGACTACGGCGGTGTGTTGTTCGCAC AGCTACGGGATTGGTCCGCGGAGGTGCAGCTGCTTATCGACGATCCGCGGCTGCACGAAGAGTTCACCGCCGCCGTCGAT CTGGGTGATCTGGTCGAGGCCAGCGGGGTCATGGGTCAATCGAACAACGGCACCCGATCGGTCCTGGTGGAGTCGTGGCG GATCATCGGCAAATGCCTGCACCCGCTCCCCGACAAGCGCAAGGGCCTTACCGACCCCGAAGCCAGGGTGCGTGCACGAT ACCTCGACCTGGCGATCAACCCCGAGGCTCGCGAGCAGATCGCGGCCCGTAGCGCGATCATCACATCGCTGCGCAATACC CTTTTGGCTCAAGGTTTCCTAGAGGTGGAAACACCGATTCTGCAGCAGGTGCACGGCGGAGCCAACGCGCGTCCCTTCCT GACACACATCAACGCGTACAACTTGGATCTGTATCTGCGTATCGCGCCGGAGCTGTACCTCAAGCGGCTCTGCGTCGGTG GCGTGGAGAAGGTCTTCGAATTGGGGCGGGCCTTCCGCAACGAGGGCGTCGACTTCAGCCATAATCCCGAATTCACCCTG CTCGAGGCCTATCAGGCGCACGCCGACTATGTGACCTGGGCCCAGACCACGCAGCGGCTCATCCAGAACGCCGCGAAAGC CGCCCACGGCGCCGAAGTGGTGATGCGGCCCGGAGCCGACGGGAGGCTGGCGCCGGTGGACATCGGTGGCGAATGGCCGA TCGTTCCCGTGCATGAGGCGGTCTCTCGCGCGCTGGGTGAAGAGGTCAACGCTGCGACGGAAGTGCCGACATTGCAAAGG TTCTGCCAGTCCGCGGAGGTGCAGTTCAATCCGCGCTGGGATGCCGGTCACCTGGTCCTGGAACTCTACGAACGGCTGGT GGAGAAACACACGACCTCACCCACGTTCTATAGCGATTTCCCGGTCTCGGTGTCGCCGCTTACCCGCCCGCACCGCAGCA TCGCCGGGCTCGCCGAGCGGTGGGATCTGGTCGCGTGGGGTGTCGAACTCGGCACCGCCTATACCGAGTTGACCGACCCG GTGGAACAGCGCCGACGCCTGTATGAGCAATCACTGCTGGCGGCCGGCGGAGACGCCGAAGCGATGGAACTCGACGAGGA TTTCCTGCGCGCGATGGAGTACGCAATGGCGCCAACCGGAGGGATGGGCATGGGAGTGGACCGGGTGGTCATGCTGATCA CCGGGCGCAGCATCCGCGAAACACTGCCCTTCCCGCTGGCCAAGCCCCGCTAG Protein sequence : MTSIKPAVEPPAPDHPAVTALPGIGARPAARPPVTSRWRWVPAFFGWFVGIQAILNFLSSISPFIRMVTKLPREFVDEYL FGWPDGSLSWAFVLSLLAAALAVRKSIAWWVLLIDLLGRSALNVGGFIEHRDTTELIGLVVHGAFILLLLLARKEFYAKV RRGATVKAALVLIAGMAAGTVLAWGLLELFPRTLVPGDRFWWALNRVAGFSIASHRDFDGLPPHFLNWLFGLFGALALIA AAIVLFRSQRAVNALTGDDESLIRGLLERYGQDDSLGYFATRRDKAVIFAPNGRAAVTYRVEVGVCLVSADPIGDKSAWG QAISAWLQVCDAYGWAPAVMGASAEGALAYREHGLNALELGDEAILYPRSFSISGPHMATVRQAVNRARRSGLSVRIRRH RELSAEETKQIIVNADLWRDGNTERGFSMALGRLGDSTDGDCLLVEAIDSTGDPVAMLSLVPWGTNGVSLELMRRSRQSP NGTIEFMVTELLTRAEGMGITRVSLNFVMFRSVYADGSRIGAGPVLRLWRSVLMFASRFWQFEQLYRSNVKYQPEWVPRF ACYEDARLIPRIGIASVIAEGFLVLPFGNRDKPRHTGQYSAVPQAIVATGLLHHDGSTPELLPQTAPQQRVPEQVKVRLG KLAALQEKGIDTYPVGSPPSHTVAEALAAPDGSEVVISGRLLRIRDYGGVLFAQLRDWSAEVQLLIDDPRLHEEFTAAVD LGDLVEASGVMGQSNNGTRSVLVESWRIIGKCLHPLPDKRKGLTDPEARVRARYLDLAINPEAREQIAARSAIITSLRNT LLAQGFLEVETPILQQVHGGANARPFLTHINAYNLDLYLRIAPELYLKRLCVGGVEKVFELGRAFRNEGVDFSHNPEFTL LEAYQAHADYVTWAQTTQRLIQNAAKAAHGAEVVMRPGADGRLAPVDIGGEWPIVPVHEAVSRALGEEVNAATEVPTLQR FCQSAEVQFNPRWDAGHLVLELYERLVEKHTTSPTFYSDFPVSVSPLTRPHRSIAGLAERWDLVAWGVELGTAYTELTDP VEQRRRLYEQSLLAAGGDAEAMELDEDFLRAMEYAMAPTGGMGMGVDRVVMLITGRSIRETLPFPLAKPR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-149 | 41 |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 9e-150 | 41 |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 9e-150 | 41 |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 9e-150 | 41 |
