Gene Information

Name : yycF (Bsph_4759)
Accession : YP_001700333.1
Strain : Lysinibacillus sphaericus C3-41
Genome accession: NC_010382
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4612260 - 4612973 bp
Length : 714 bp
Strand : -
Note : -

DNA sequence : 
ATGAACAAAACAATTTTAGTTGTTGATGATGAAAAACCAATCGCAGATATTCTGCAATTTAATTTAATAAAAGAAGGATA
TAAAGTGATTTGTGCTTATGATGGGGATGAGGCACTAAAGAGGGTTGAGGAGGAACAACCAGATTTAATGCTCCTAGATA
TAATGCTGCCAAAGCGTGATGGTATGGAAGTGTGTAGAGAGGTACGAAAAAAATATGACTTCCCTATTATTATGCTGACG
GCTAAAGGCTCTGAGATTGATAAAGTTTTAGGCTTAGAAATGGGTGCAGATGATTATGTTACTAAGCCATTTAGTACACG
AGAGCTTATTGCTCGTGTAAAGGCCAATATGCGACGTTTACAGGTTGCTGCACCTGTAGCAGAAGAGGCAGAAGAGGAAT
CAAACGAAATTGTTGTAGGATCCCTTGTTATTCAACCAGATGCATATTTAGTAATGAAGCGTGATGAGGCCATTGAGCTT
ACACATCGGGAATTTGAGCTGCTACATTATTTAGGCAAACATATTGGCCAAGTAATGACCCGTGAGCATTTATTACAAAC
GGTATGGGGCTATGACTATTTAGGTGATGTTCGTACTGTTGACGTAACAATTCGTCGTTTACGTGAAAAAATTGAGGATA
ATCCTAGTCACCCTGCTTGGATTGTCACAAGACGTGGTGTAGGTTATTACTTACGAACTCCTGAACAGGAGTAA

Protein sequence : 
MNKTILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKRVEEEQPDLMLLDIMLPKRDGMEVCREVRKKYDFPIIMLT
AKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQVAAPVAEEAEEESNEIVVGSLVIQPDAYLVMKRDEAIEL
THREFELLHYLGKHIGQVMTREHLLQTVWGYDYLGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYLRTPEQE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 7e-34 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 3e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yycF YP_001700333.1 transcriptional regulatory protein NC_012469.1.7685629. Protein 1e-67 64
yycF YP_001700333.1 transcriptional regulatory protein NC_002952.2859905.p0 Protein 8e-56 55
yycF YP_001700333.1 transcriptional regulatory protein NC_009641.5332272.p0 Protein 7e-56 54
yycF YP_001700333.1 transcriptional regulatory protein NC_013450.8614421.p0 Protein 7e-56 54
yycF YP_001700333.1 transcriptional regulatory protein NC_007793.3914279.p0 Protein 7e-56 54
yycF YP_001700333.1 transcriptional regulatory protein NC_007622.3794472.p0 Protein 5e-56 54
yycF YP_001700333.1 transcriptional regulatory protein NC_002745.1124361.p0 Protein 7e-56 54
yycF YP_001700333.1 transcriptional regulatory protein NC_009782.5559369.p0 Protein 7e-56 54
yycF YP_001700333.1 transcriptional regulatory protein NC_002951.3237708.p0 Protein 7e-56 54
yycF YP_001700333.1 transcriptional regulatory protein NC_003923.1003749.p0 Protein 6e-56 54
yycF YP_001700333.1 transcriptional regulatory protein NC_002758.1121668.p0 Protein 7e-56 54
yycF YP_001700333.1 transcriptional regulatory protein HE999704.1.gene2815. Protein 3e-47 50
yycF YP_001700333.1 transcriptional regulatory protein NC_012469.1.7686381. Protein 1e-43 49
yycF YP_001700333.1 transcriptional regulatory protein AE016830.1.gene1681. Protein 3e-46 46
yycF YP_001700333.1 transcriptional regulatory protein AM180355.1.gene1830. Protein 4e-41 45
yycF YP_001700333.1 transcriptional regulatory protein DQ212986.1.gene4.p01 Protein 5e-40 45
yycF YP_001700333.1 transcriptional regulatory protein FJ349556.1.orf0.gene Protein 1e-38 45
yycF YP_001700333.1 transcriptional regulatory protein AF155139.2.orf0.gene Protein 1e-36 44
yycF YP_001700333.1 transcriptional regulatory protein AE000516.2.gene3505. Protein 8e-37 44
yycF YP_001700333.1 transcriptional regulatory protein HE999704.1.gene1528. Protein 9e-32 43
yycF YP_001700333.1 transcriptional regulatory protein AF162694.1.orf4.gene Protein 9e-36 43
yycF YP_001700333.1 transcriptional regulatory protein CP004022.1.gene3215. Protein 3e-36 42
yycF YP_001700333.1 transcriptional regulatory protein NC_014475.1.orf0.gen Protein 1e-38 42
yycF YP_001700333.1 transcriptional regulatory protein NC_005054.2598277.p0 Protein 1e-38 42
yycF YP_001700333.1 transcriptional regulatory protein EU250284.1.orf4.gene Protein 1e-37 42
yycF YP_001700333.1 transcriptional regulatory protein AF130997.1.orf0.gene Protein 2e-36 42
yycF YP_001700333.1 transcriptional regulatory protein CP001918.1.gene5135. Protein 4e-28 42
yycF YP_001700333.1 transcriptional regulatory protein NC_002695.1.915041.p Protein 2e-31 41
yycF YP_001700333.1 transcriptional regulatory protein CP000034.1.gene3834. Protein 2e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yycF YP_001700333.1 transcriptional regulatory protein VFG1389 Protein 1e-28 42
yycF YP_001700333.1 transcriptional regulatory protein VFG1390 Protein 2e-32 41
yycF YP_001700333.1 transcriptional regulatory protein VFG1563 Protein 4e-34 41
yycF YP_001700333.1 transcriptional regulatory protein VFG1702 Protein 1e-33 41