Gene Information

Name : cbrD (Bsph_1675)
Accession : YP_001697401.1
Strain : Lysinibacillus sphaericus C3-41
Genome accession: NC_010382
Putative virulence/resistance : Virulence
Product : achromobactin transport ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 1767899 - 1768750 bp
Length : 852 bp
Strand : +
Note : -

DNA sequence : 
GTGAGAGAAGAGGGTGAAGGGATTTTGAAAAACGTCTTAGAAGTACAAAATCTAGATGTTAGCTATGGTGAAAATCTTAT
TTTAGAAGATTTGAATCTTCAAATACCAAAAGGGAAAATTACGGTACTAGTAGGTGCCAATGGCTGTGGAAAATCTACGC
TCCTTAGAACGTTTGCCCGACTGCAAAAACCAAGGTCAGGTGAAATTTTCTTAGAAAATCATCCACTAGACGCCATTTCA
ACTAAAGAGGTGGCAAAACGTTTAGCCATTCTTCCACAGGGACCTGTTGCACCAGAAGGATTAACTGTCCAACAATTGAT
TAAACAAGGTCGTTACCCTCATCAGAGCTGGTTAAAGCAATGGTCTACAGAGGATGAAACTATTGTGAACAATGCTCTTG
AGGTGACACAGATGACCGAATTTGCGGATCGCCCAGTAGATGCATTATCAGGTGGACAGCGTCAGCGTGTGTGGATTGCT
ATGACATTGGCTCAAAAAACGGATCTTATTTTACTAGATGAACCTACAACCTATTTAGATATGGCTCATCAAGTAGAAAT
TTTAGATTTACTATTTGATTTGAATGAACATGAAGGCCGTACAGTTGTTATGGTATTACACGATTTAAACTTAGCCTGTC
GTTATGCTCATCATATTGTAGCTGTGCGAAATAAACGGGTATACGCACAAGGAAAGCCAGAGGAAGTGGTGACACCTGAG
ATGGTACAAGCGGTCTTTCGGATGGACTGTACCATAATGAGAGACCCTCTATTTGGAACGCCATTATGTGTTCCGCATGG
TAAGGGACGAACAGTTCAGATGGAAGCATTTGAGGAGGTAGCGGCCACTTGA

Protein sequence : 
MREEGEGILKNVLEVQNLDVSYGENLILEDLNLQIPKGKITVLVGANGCGKSTLLRTFARLQKPRSGEIFLENHPLDAIS
TKEVAKRLAILPQGPVAPEGLTVQQLIKQGRYPHQSWLKQWSTEDETIVNNALEVTQMTEFADRPVDALSGGQRQRVWIA
MTLAQKTDLILLDEPTTYLDMAHQVEILDLLFDLNEHEGRTVVMVLHDLNLACRYAHHIVAVRNKRVYAQGKPEEVVTPE
MVQAVFRMDCTIMRDPLFGTPLCVPHGKGRTVQMEAFEEVAAT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 4e-59 49
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-65 49
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 5e-60 46
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 5e-60 46
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-60 46
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-60 46
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-60 46
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 3e-60 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-51 42
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-50 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-50 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-50 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-50 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbrD YP_001697401.1 achromobactin transport ATP-binding protein BAC0164 Protein 2e-59 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbrD YP_001697401.1 achromobactin transport ATP-binding protein VFG1042 Protein 2e-59 49
cbrD YP_001697401.1 achromobactin transport ATP-binding protein VFG0925 Protein 1e-64 49