Gene Information

Name : gmd (OE1115F)
Accession : YP_001688311.1
Strain : Halobacterium salinarum R1
Genome accession: NC_010364
Putative virulence/resistance : Virulence
Product : nucleoside-diphosphate-sugar epimerase ( dTDP-glucose 4,6-dehydratase)
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : -
Position : 64896 - 65825 bp
Length : 930 bp
Strand : +
Note : -

DNA sequence : 
ATGCCGACTGCACTCGTGACCGGTGTCGCGGGATTCATTGGGTCACATCTCGCGGCCGCGCTTCTGGACCGCGGCTACGA
CGTTCGGGGCGTCGACAACTTTGCCACGGGGCACGACCAGAACCTCGAACCACTCCGTGGTACCGGAGATTTCTCGTTCT
ACGAGGCGGACATTCGCGACGCTGATCTCGTCGCTGATGTCACAAATGGTGTCGACTACGTCTTCCACCAGGCCGCAGAT
TCCTCCGTCCCGCGCAGCGTCGAGGACCCCGTCACTACGACTGACGTCAACTGCACGGGGACAGCCACTGTCATCGACGC
CGCCCGCGAGGCTGACGTTGATACCGTTGTCGTCGCCTCCTCCGCTGCAATTTACGGCTCCACTGAAACATTCCCGAAGG
TCGAGTCGATGACCGAGCAACCCGAATCGCCGTATGCGCTCTCGAAGCACTACACGGAGAAGCTAGCACTTCAGGCCAGC
GAGCTCTACGACATCGACACGGCCGCGCTCCGCTACTTCAACATCTATGGGCCACGCCAGGATCCGAATGGTGACTACGC
TGCGGTCATCCCGAAGTTCATCTCGCTGATGCTGGACGGCGAGCGCCCGGTCATCTATGGGGACGGCGAGCAGTCCCGTG
ATTTCACGTTCATCGACAACGCCATCCAGGCGAACATCCGCGCCGCCGAAGGTGATGTCACCGGCGAGGCGTTCAACGTC
GGCTGTGGTGGCCGCGTCACCGTCAACGAGCTCGTCGACGTGCTCAACGACCTCCTCGACACGGACATCGACCCCATCTA
TGACGACCCACGGCCGGGCGACGTGCGGCACTCTCACGCTGACATCTCGAAGGCCCGCGAGCTTCTGAGCTACGAGCCCG
AGGTGGGGTTCTCTGAGGGACTCGAGCAGACGATTCCGTACTATCGGTAG

Protein sequence : 
MPTALVTGVAGFIGSHLAAALLDRGYDVRGVDNFATGHDQNLEPLRGTGDFSFYEADIRDADLVADVTNGVDYVFHQAAD
SSVPRSVEDPVTTTDVNCTGTATVIDAAREADVDTVVVASSAAIYGSTETFPKVESMTEQPESPYALSKHYTEKLALQAS
ELYDIDTAALRYFNIYGPRQDPNGDYAAVIPKFISLMLDGERPVIYGDGEQSRDFTFIDNAIQANIRAAEGDVTGEAFNV
GCGGRVTVNELVDVLNDLLDTDIDPIYDDPRPGDVRHSHADISKARELLSYEPEVGFSEGLEQTIPYYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 2e-44 42
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 2e-44 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gmd YP_001688311.1 nucleoside-diphosphate-sugar epimerase ( dTDP-glucose 4,6-dehydratase) VFG0430 Protein 9e-45 42