Gene Information

Name : Caul_2002 (Caul_2002)
Accession : YP_001683628.1
Strain : Caulobacter sp. K31
Genome accession: NC_010338
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2148253 - 2149113 bp
Length : 861 bp
Strand : -
Note : PFAM: Integrase catalytic region; KEGG: rso:RSp0548 ISRSO8-transposase orfB protein

DNA sequence : 
ATGAAGTTCGGGTTCGTCGATGAGCACCGCGGCGTCTGGCCGGTTCGAATGATGTGTCGGGTCCTGGGCCTGTCGGCCAG
CGGCTACTACGCTTGGCGCGTCAGGCCCGAGGGCCGGCGGGCGGCGGCCAACCGCGCCCTGATCGAGGACATCCGCCTGA
TCCATGCCGAGAGCTGCGGAACCTACGGTTCGCCGCGCGTCCACGCCGTCTTGCGCGGCCATGGCCGCCGTATCGGACGC
TCGCGGGTCGAGCGGCTGATGCGCCGCGCCGGCCTGCGCGGCCTGGCCGCTTTGCCCCGCCGCACCCGGACGACCGACAG
CCGCCATGGCTATCCGATCGCCCCCAATAGGCTCGCCCGTAACTTCCAGGCGGCGGCCCCTGGCCAGGTCTGGCTCGCCG
ACCTGACCTATATTCCGACCGGGGAAGGCTGGCTCTATCTGGCCGGCATCCTCGACATGCACACCCGCAAGCTCGTCGGC
TGGTCGATGCGCGACACCTTGCACGCCCGGATCGCCCTGGAGGCCCTGACCATGGCCATCGAGCGCCAAAAGCCCGCGCC
CGGACTCATCCATCATTCGGATCGCGGCATTCAATACGCCGCCGAGACCTACCGCTCGGCCCTGGCCCAGTCAGGGATCA
CCCCATCCATGAGCCGCAAGGGCGACTGCTGGGACAACGCCCCGATGGAAAGTTTCTTCCACACCCTCAAGACCGAGCGG
GTCCATCACCGGATCTACGCCACCCGCGCCGAGGCCCGGCGCGATCTGTTCGGCTATATCGAGGGCTTCTACAATTCACG
TCGCCTGCACTCGGCTCTGGGCTATATCAGTCCCGCCGAGATGGAACGCAGAGCGGCTTAA

Protein sequence : 
MKFGFVDEHRGVWPVRMMCRVLGLSASGYYAWRVRPEGRRAAANRALIEDIRLIHAESCGTYGSPRVHAVLRGHGRRIGR
SRVERLMRRAGLRGLAALPRRTRTTDSRHGYPIAPNRLARNFQAAAPGQVWLADLTYIPTGEGWLYLAGILDMHTRKLVG
WSMRDTLHARIALEALTMAIERQKPAPGLIHHSDRGIQYAAETYRSALAQSGITPSMSRKGDCWDNAPMESFFHTLKTER
VHHRIYATRAEARRDLFGYIEGFYNSRRLHSALGYISPAEMERRAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAF09030.1 unknown Not tested SHI-O Protein 1e-45 47
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 1e-45 47
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 1e-45 47
unnamed AAF09022.1 unknown Not tested SHI-O Protein 7e-46 47
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 1e-45 47
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 1e-45 47
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 1e-45 47
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 1e-45 47
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 6e-46 46
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 4e-48 43
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 4e-48 43
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 4e-48 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Caul_2002 YP_001683628.1 integrase catalytic subunit VFG1706 Protein 6e-46 47