Gene Information

Name : HM1_2078 (HM1_2078)
Accession : YP_001680646.1
Strain : Heliobacterium modesticaldum Ice1
Genome accession: NC_010337
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2080415 - 2081113 bp
Length : 699 bp
Strand : +
Note : -

DNA sequence :
ATGGCGAAGATCCTGGTAGTGGAAGACGATCAACACATTTTGGAACTGGTCCGCTTCAACCTGGAAAAAGAGGGCCACAC
CGTCCAGGTGGCCGTCGACGGAGAGGCCGCCCTGGCCTGCCTTCAGGAGGAGCTTCCGGACCTGATCATCCTCGATCTGA
TGTTGCCGCGCCTGGACGGCCTCGAGCTGTGCCGGCGCGTGCGCTCGCGGAATCACTCCGCCCATCTGCCTATTCTCATG
CTGACAGCCAAAGGGGAAGAGGTGGACAAGGTGATCGGCCTGGAGATGGGCGCTGACGACTACATGACCAAACCCTTCAG
CCCTCGCGAACTGGTTGCTCGCATCAAGGCCTTGTTGCGCCGTGCCACCCGCAGCGATGTCCGCCTCGGCGGTCCTATGC
AGGTGGGCGAGTTGACCATCGATGCCGACCGCTATGAGATCCGCGTGGGCGGCGTCAAACAGGACATGACGCCGAAGGAA
TTCGAACTGCTGCGTTGGCTCGCCTCCCATCCGGGCAAGGTCTTCACCCGCGAATTTCTCTTAGAGAAAATCTGGGGATA
CGACTTTTTCGGCGACAGCCGGACGGTAGATGTCCATATCCGCCACCTGCGGCAAAAGGTCGAAAAGGATCCGGGAAACC
CTCGTTACATTGAGACGGTTCGCGGTGTCGGTTACAAGTTTCGCGATCCGGAGGCCTGA

Protein sequence :
MAKILVVEDDQHILELVRFNLEKEGHTVQVAVDGEAALACLQEELPDLIILDLMLPRLDGLELCRRVRSRNHSAHLPILM
LTAKGEEVDKVIGLEMGADDYMTKPFSPRELVARIKALLRRATRSDVRLGGPMQVGELTIDADRYEIRVGGVKQDMTPKE
FELLRWLASHPGKVFTREFLLEKIWGYDFFGDSRTVDVHIRHLRQKVEKDPGNPRYIETVRGVGYKFRDPEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-36 46
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 3e-36 45
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HM1_2078 YP_001680646.1 transcriptional regulator NC_012469.1.7685629. Protein 9e-47 54
HM1_2078 YP_001680646.1 transcriptional regulator HE999704.1.gene2815. Protein 3e-49 52
HM1_2078 YP_001680646.1 transcriptional regulator NC_002952.2859905.p0 Protein 5e-47 51
HM1_2078 YP_001680646.1 transcriptional regulator NC_002951.3237708.p0 Protein 5e-47 51
HM1_2078 YP_001680646.1 transcriptional regulator NC_007622.3794472.p0 Protein 5e-47 51
HM1_2078 YP_001680646.1 transcriptional regulator NC_002758.1121668.p0 Protein 5e-47 51
HM1_2078 YP_001680646.1 transcriptional regulator NC_009641.5332272.p0 Protein 5e-47 51
HM1_2078 YP_001680646.1 transcriptional regulator NC_013450.8614421.p0 Protein 5e-47 51
HM1_2078 YP_001680646.1 transcriptional regulator NC_003923.1003749.p0 Protein 6e-47 51
HM1_2078 YP_001680646.1 transcriptional regulator NC_007793.3914279.p0 Protein 5e-47 51
HM1_2078 YP_001680646.1 transcriptional regulator NC_002745.1124361.p0 Protein 5e-47 51
HM1_2078 YP_001680646.1 transcriptional regulator NC_009782.5559369.p0 Protein 5e-47 51
HM1_2078 YP_001680646.1 transcriptional regulator AE016830.1.gene1681. Protein 2e-46 50
HM1_2078 YP_001680646.1 transcriptional regulator NC_012469.1.7686381. Protein 3e-44 48
HM1_2078 YP_001680646.1 transcriptional regulator AE000516.2.gene3505. Protein 2e-32 47
HM1_2078 YP_001680646.1 transcriptional regulator AF155139.2.orf0.gene Protein 2e-37 45
HM1_2078 YP_001680646.1 transcriptional regulator NC_011595.7057856.p0 Protein 2e-29 44
HM1_2078 YP_001680646.1 transcriptional regulator NC_010410.6002989.p0 Protein 2e-29 44
HM1_2078 YP_001680646.1 transcriptional regulator NC_005054.2598277.p0 Protein 3e-36 44
HM1_2078 YP_001680646.1 transcriptional regulator FJ349556.1.orf0.gene Protein 3e-34 44
HM1_2078 YP_001680646.1 transcriptional regulator NC_014475.1.orf0.gen Protein 3e-36 44
HM1_2078 YP_001680646.1 transcriptional regulator CP000034.1.gene3671. Protein 3e-33 44
HM1_2078 YP_001680646.1 transcriptional regulator NC_010400.5986590.p0 Protein 6e-29 43
HM1_2078 YP_001680646.1 transcriptional regulator CP001138.1.gene2239. Protein 2e-30 43
HM1_2078 YP_001680646.1 transcriptional regulator CP000034.1.gene2186. Protein 9e-31 43
HM1_2078 YP_001680646.1 transcriptional regulator NC_002695.1.916589.p Protein 8e-31 43
HM1_2078 YP_001680646.1 transcriptional regulator BAC0596 Protein 2e-30 43
HM1_2078 YP_001680646.1 transcriptional regulator BAC0039 Protein 9e-31 43
HM1_2078 YP_001680646.1 transcriptional regulator AE015929.1.gene1106. Protein 4e-30 42
HM1_2078 YP_001680646.1 transcriptional regulator NC_003923.1003417.p0 Protein 4e-33 42
HM1_2078 YP_001680646.1 transcriptional regulator NC_013450.8614146.p0 Protein 4e-33 42
HM1_2078 YP_001680646.1 transcriptional regulator NC_002951.3238224.p0 Protein 4e-33 42
HM1_2078 YP_001680646.1 transcriptional regulator NC_007793.3914065.p0 Protein 4e-33 42
HM1_2078 YP_001680646.1 transcriptional regulator NC_002758.1121390.p0 Protein 4e-33 42
HM1_2078 YP_001680646.1 transcriptional regulator NC_010079.5776364.p0 Protein 4e-33 42
HM1_2078 YP_001680646.1 transcriptional regulator NC_002952.2859858.p0 Protein 4e-33 42
HM1_2078 YP_001680646.1 transcriptional regulator NC_007622.3794948.p0 Protein 4e-33 42
HM1_2078 YP_001680646.1 transcriptional regulator CP000647.1.gene4257. Protein 1e-27 42
HM1_2078 YP_001680646.1 transcriptional regulator CP004022.1.gene3215. Protein 1e-26 42
HM1_2078 YP_001680646.1 transcriptional regulator NC_002695.1.915041.p Protein 2e-27 42
HM1_2078 YP_001680646.1 transcriptional regulator BAC0533 Protein 1e-27 42
HM1_2078 YP_001680646.1 transcriptional regulator CP000034.1.gene3834. Protein 2e-27 42
HM1_2078 YP_001680646.1 transcriptional regulator CP001918.1.gene3444. Protein 2e-29 42
HM1_2078 YP_001680646.1 transcriptional regulator HE999704.1.gene1528. Protein 2e-26 41
HM1_2078 YP_001680646.1 transcriptional regulator CP001138.1.gene4273. Protein 1e-27 41
HM1_2078 YP_001680646.1 transcriptional regulator AF130997.1.orf0.gene Protein 2e-29 41
HM1_2078 YP_001680646.1 transcriptional regulator AF162694.1.orf4.gene Protein 1e-29 41
HM1_2078 YP_001680646.1 transcriptional regulator CP000647.1.gene2531. Protein 4e-30 41
HM1_2078 YP_001680646.1 transcriptional regulator NC_008702.1.4607594. Protein 1e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HM1_2078 YP_001680646.1 transcriptional regulator VFG1702 Protein 6e-37 46
HM1_2078 YP_001680646.1 transcriptional regulator VFG1563 Protein 2e-36 45
HM1_2078 YP_001680646.1 transcriptional regulator VFG1389 Protein 7e-30 45
HM1_2078 YP_001680646.1 transcriptional regulator VFG1390 Protein 2e-35 44
HM1_2078 YP_001680646.1 transcriptional regulator VFG0596 Protein 1e-24 41