Gene Information

Name : Shal_0860 (Shal_0860)
Accession : YP_001673094.1
Strain : Shewanella halifaxensis HAW-EB4
Genome accession: NC_010334
Putative virulence/resistance : Unknown
Product : tyrosine recombinase XerD
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 1072501 - 1073403 bp
Length : 903 bp
Strand : +
Note : TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sbm:Shew185_3524 tyrosine recombinase XerD

DNA sequence : 
GTGACCGATAAGTACACGCCCGATAGCTTAATTGATCTGTTCTTAGACGATCTTTGGTCAACCAAGGGGCTTAGCGATAA
CACCTTAAGTGCCTATCGCACCGACCTGCGTCACCTCGACCGTTACCTGCAAAAGTTGGGGGGGGAGCTAGTCACTTGCT
CTCAGCTTGAAGTGCGAGACTATCTTGCTGAACGCTTCGATAAGGGCAGCGCTAAGACCAGTAGTGCGCGCATGATGAGC
AGCCTTAGACGCTTCTATGGTTATCTTATCGTCAAAAAGCAGATCGATACCGATCCCATGGCATTGATCGAGTCACCTAA
ACTTTCCCGTAAACTCCCGGACTCATTGAGTGAAGAGGATATCGACCGTTTGTTGGCGGAGCCTATTGAAGACGATCCTA
TCGAGTGCCGTGATAAAGCCATGCTAGAGCTGTTATACGCCACAGGGCTTCGTGTCTCTGAGCTGGTGGGCTTGACCATG
GAGCAACTAAGCTTGCGCCAAGGGCTGGTGCGCATTACGGGTAAAGGCGGTAAGGAGCGTTTAGTGCCGCTTGGCGAGCT
GGCCATCACCGAGATAGAGTCCTACCTTAAGTTTGCCAGAACCGAGCTGCTTAAGGGCAAGCAGAGTGATGTATTGTTCC
CCTCAAAGCGGGGGCAGCAGATGACGCGACAAACCTTTTGGCATCGTATTAAGCTTTATGCCTTAAGGGCTGGCATTAGC
ACCGAACTGTCACCGCACACCCTAAGGCACGCATTTGCTACTCATCTGCTTAACCATGGAGCGGATCTGCGCGTGGTGCA
GCTGTTGCTCGGCCATAGCGACCTGTCGACGACGCAAATCTATACCCATGTTGCGACTGCAAGGCTGGCAACACTGCACA
GTGAACATCATCCCCGAGGCTGA

Protein sequence : 
MTDKYTPDSLIDLFLDDLWSTKGLSDNTLSAYRTDLRHLDRYLQKLGGELVTCSQLEVRDYLAERFDKGSAKTSSARMMS
SLRRFYGYLIVKKQIDTDPMALIESPKLSRKLPDSLSEEDIDRLLAEPIEDDPIECRDKAMLELLYATGLRVSELVGLTM
EQLSLRQGLVRITGKGGKERLVPLGELAITEIESYLKFARTELLKGKQSDVLFPSKRGQQMTRQTFWHRIKLYALRAGIS
TELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATARLATLHSEHHPRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 1e-58 53
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 1e-58 53