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Name : lysS (Shal_0810) Accession : YP_001673044.1 Strain : Shewanella halifaxensis HAW-EB4 Genome accession: NC_010334 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1010787 - 1012292 bp Length : 1506 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACTGAACAAACACAAGACGAGAACAAGTTAATTGCAGAGCGTCGTGCTAAATTAGAGCACATTCGTACCAACTGCCC TGCAAACGGTCACCCGAACAACTTCGATCGAAAACACAAAGCGGCAGACATTCAAGCTGAATTTGGTCACAACACCAAAG AAGAGCTTGAAGGCATGGGCATTGAGCGTTCAATCGCTGGCCGTGTTATGGCTAAGCGTGGTCCATTCTTGGTTATTCAA GATGTGAGCGGTCGTATCCAAGCTTATGCGGGTAAAGACGTTCAAAAAGATCTTAAAGAGAAATTCCAAGGTCTAGATAT CGGTGACATCATCGGTGTGACGGGTCAGCTACACCTATCGGGTAAGGGCGACCTATATGTGAACATGGAAGAGTACCAGT TGCTAACTAAAGCTCTGCGCCCACTTCCTGAAAAGTTCCACGGTCTAACAGACCAAGAGACACGTTACCGTCAGCGTTAT GTTGACTTGATCGTTAACGAACAGTCACGTGAAGCCTTTATCATGCGTTCTAAAGTCGTTTCGGCTATTCGTAACTTCAT GGTGAAGAAAGAGTTCATGGAAGTTGAAACACCAATGATGCACAGCATTCCTGGTGGTGCTTCAGCACGTCCATTCGCGA CGCATCACAATGCGCTAGATATCGCGATGTACCTACGTATTGCACCTGAGCTATACCTTAAGCGTCTAGTGGTTGGTGGT TTTGAGCGCGTATTCGAAATTAACCGTAACTTCCGTAACGAAGGTCTATCTCCACGTCATAACCCTGAATTCACTATGAT GGAATTCTATATGGCGTATGCAGATTTCAACGATCTAATGGACTTGACTGAAGAGATGCTAAGCTCTATCGCCACTGAGC TTTGTGGTTCGCCACAACTGCCATACGGTGAGCACACGGTTGATTTTGGTGGCCCATATGCACGTTTGAGCATGTTGGAT GCGATCAAGAAGTACAACCCTGACAATGCAACAATCCAGTCGATGACTTACGAAGAAGTTAAAGACGTTGAATTTATGCG TGATTTGGCTAAGAGCCTAGGCATGACAGTTGAGAAGTTCTGGACTTGTGGTCAGCTACTCGAAGAGATCTTCGGTGAAA CAGCTGAAACTCAGTTGATGCAACCTACGTTCATCACTGGCTACCCAGCAGACATCTCTCCGCTAGCACGTCGTAACGAC GACAACCATTTCATCACTGACCGTTTCGAGTTCTTCATCGGCGGCCGTGAAGTGGCTAACGGTTTCTCAGAGCTTAACGA TGCTGAAGATCAAGACCGCCGTTTCAAGGCGCAGGTTGATGCTAAAGACGCGGGTGATGACGAAGCTATGTTCTACGATG CAGACTACATCACTGCACTAGAGCACGGTCTACCGCCAACTGCGGGTCAAGGTATCGGTATCGACCGTCTAGTGATGCTA TTCACTAACACGCACACAATTCGTGACGTGATCCTATTCCCAGCGATGCGCCCACAGGCTAACTAA Protein sequence : MTEQTQDENKLIAERRAKLEHIRTNCPANGHPNNFDRKHKAADIQAEFGHNTKEELEGMGIERSIAGRVMAKRGPFLVIQ DVSGRIQAYAGKDVQKDLKEKFQGLDIGDIIGVTGQLHLSGKGDLYVNMEEYQLLTKALRPLPEKFHGLTDQETRYRQRY VDLIVNEQSREAFIMRSKVVSAIRNFMVKKEFMEVETPMMHSIPGGASARPFATHHNALDIAMYLRIAPELYLKRLVVGG FERVFEINRNFRNEGLSPRHNPEFTMMEFYMAYADFNDLMDLTEEMLSSIATELCGSPQLPYGEHTVDFGGPYARLSMLD AIKKYNPDNATIQSMTYEEVKDVEFMRDLAKSLGMTVEKFWTCGQLLEEIFGETAETQLMQPTFITGYPADISPLARRND DNHFITDRFEFFIGGREVANGFSELNDAEDQDRRFKAQVDAKDAGDDEAMFYDADYITALEHGLPPTAGQGIGIDRLVML FTNTHTIRDVILFPAMRPQAN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-137 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001673044.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-137 | 57 |
