Gene Information

Name : Shal_4291 (Shal_4291)
Accession : YP_001676490.1
Strain : Shewanella halifaxensis HAW-EB4
Genome accession: NC_010334
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 5203225 - 5203929 bp
Length : 705 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_6481 ABC transporter related

DNA sequence : 
ATGAAAAAGGAAGTACTCAACATAAAGCAGATCTATAAGTCCTTTGCCGCCGGACAGGTGAAAACGCCAGTGCTCAATGG
TGTCTGTTTTTCTGTTTGTGAGGGCGAGTATGTCGCTATATCTGGGCCATCGGGTTGCGGCAAATCGACGCTGCTTAATA
TCTTAGGGCTGCTCGATACCCCTGATAGCGGTGAATATTATATCGATGGTCTACTGGTCTCAGATATGAATGCCAATGAG
CGCGCTGCAGTGCGCAGTCGTCGGATTGGTTTTGTATTCCAAGCGTTTAACTTAATCGATGAAGAGTCGGTGCTGGATAA
TGTTGCCCTGCCGCTTAAGTATCGTGGTGATAATCTTAAGCAACGCCAGCGAAGAGCGTTGGAGTGCTTAGACAAAGTGG
GGCTGTCCGATAAGGCAGCGCTATTTCCTAATCAACTCTCTGGTGGTCAACAGCAAAGGGTGTCGATTGCTAGGGCCCTG
GCGGCAGATTCAGGCATCATGTTGGTCGATGAGCCTACGGGAAACCTAGACTCGAACAATGGTGACGCCGTGATGGCGCT
GCTAAGCGAGCTTAACCGTCAGGGAACCACCATTTGTCTGGTTACTCATGATCCCCGCTATGCTCAGATGGCAGATAGAC
AGATTAACTTACTCGATGGCAAGGTCGTTATCGAAACGGCTGTCAATATCGAGTGTGTCGCATGA

Protein sequence : 
MKKEVLNIKQIYKSFAAGQVKTPVLNGVCFSVCEGEYVAISGPSGCGKSTLLNILGLLDTPDSGEYYIDGLLVSDMNANE
RAAVRSRRIGFVFQAFNLIDEESVLDNVALPLKYRGDNLKQRQRRALECLDKVGLSDKAALFPNQLSGGQQQRVSIARAL
AADSGIMLVDEPTGNLDSNNGDAVMALLSELNRQGTTICLVTHDPRYAQMADRQINLLDGKVVIETAVNIECVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-31 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-31 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-31 44
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 9e-33 42
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 8e-23 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shal_4291 YP_001676490.1 ABC transporter-like protein NC_012469.1.7686878. Protein 3e-52 48
Shal_4291 YP_001676490.1 ABC transporter-like protein NC_008702.1.4606598. Protein 3e-37 46
Shal_4291 YP_001676490.1 ABC transporter-like protein CP001581.1.gene798.p Protein 1e-37 44
Shal_4291 YP_001676490.1 ABC transporter-like protein NC_012469.1.7685735. Protein 5e-35 43
Shal_4291 YP_001676490.1 ABC transporter-like protein NC_012469.1.7686946. Protein 1e-28 41
Shal_4291 YP_001676490.1 ABC transporter-like protein CP001581.1.gene598.p Protein 2e-34 41