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Name : fliP (Shal_4233) Accession : YP_001676432.1 Strain : Shewanella halifaxensis HAW-EB4 Genome accession: NC_010334 Putative virulence/resistance : Virulence Product : flagellar biosynthesis protein FliP Function : - COG functional category : N : Cell motility COG ID : COG1338 EC number : 3.1.1.3 Position : 5141243 - 5141971 bp Length : 729 bp Strand : - Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus DNA sequence : ATGTGGCGAGTGTTGCTGGTTTTTGTGTTGAGTTTTTCATCGGCGGCTTATGCGAGTGATGGCTTAACGTTATTTTCTCT GGCAGATGGTGATAAGACACAGGCGGTGAGTGTAAAGCTGGAAATTTTAGCCTTGATGACAGTGCTGAGTTTTCTGCCCG CATTATTAATGATGCTCACCAGCTTCACTCGAATCATTGTCGTGTTAGCCATTCTGCGTCAAGCCTTAGGTTTGCAACAA AGCCCGCCCAACAAGGTATTAATCGGTATCGCTTTAGTGATGACCATTTTTATTATGCGACCCGTCGGGCAAGAGATCTA TGACGATGCTTTTCTACCTTACGATATGGGACAGATAGAGCTTCCTGAGGCTGTGGCACGTGGCGAGGTGCCACTACGTC AGTTTATGTTGGCACAAACTCGTGAGACGGATCTTGAGCAGATGCTGAAGATTGCCGACGAACCGATCACATTAACGGCC GATGAAATTCCATTCTTTGTCCTGATGCCTGCATTTGTATTGAGTGAACTAAAGACCGCATTTCAGATTGGTTTCCTGCT GTTCTTGCCTTTTTTGGTGATCGATTTGGTGGTTGCGAGCGTGTTGATGTCTATGGGTATGATGATGCTGTCGCCCCTTA TTATCTCTTTGCCATTTAAATTAATGGTGTTTGTGTTAGTCGATGGTTGGTCTATGACGGTGAGTACCTTGGTGGCAAGT TATGGTTAG Protein sequence : MWRVLLVFVLSFSSAAYASDGLTLFSLADGDKTQAVSVKLEILALMTVLSFLPALLMMLTSFTRIIVVLAILRQALGLQQ SPPNKVLIGIALVMTIFIMRPVGQEIYDDAFLPYDMGQIELPEAVARGEVPLRQFMLAQTRETDLEQMLKIADEPITLTA DEIPFFVLMPAFVLSELKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVSTLVAS YG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 2e-25 | 47 |
| hrcR | AAP34349.1 | HrcR | Virulence | Hrp PAI | Protein | 8e-28 | 46 |
| hrcR | BAB07862.1 | HrcR | Virulence | Hrp PAI | Protein | 5e-27 | 45 |
| hrcR | AAD21321.1 | HrcR | Virulence | Hrp PAI | Protein | 7e-28 | 45 |
| XC_3016 | YP_244084.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 4e-27 | 45 |
| hrcR | NP_636600.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 4e-27 | 45 |
| hrcR | NP_640757.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 9e-28 | 45 |
| hrcR | YP_362153.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 9e-28 | 45 |
| hrcR | YP_198720.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 5e-27 | 45 |
| hrcR | AAT96262.1 | HrcR | Virulence | S-PAI | Protein | 2e-18 | 44 |
| hrcR | AAT96303.1 | HrcR | Virulence | S-PAI | Protein | 2e-18 | 44 |
| hrcR | AAT96343.1 | HrcR | Virulence | S-PAI | Protein | 2e-18 | 44 |
| escR | AFO66317.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 7e-22 | 43 |
| escR | AFO66400.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 7e-22 | 43 |
| hrcR | NP_791222.3 | type III secretion protein HrcR | Virulence | Hrp PAI | Protein | 5e-19 | 41 |
| hrcR | ABA47279.1 | HrcR | Virulence | S-PAI | Protein | 1e-19 | 41 |
| hrcR | AAG33884.1 | HrcR | Virulence | Hrp PAI | Protein | 2e-19 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fliP | YP_001676432.1 | flagellar biosynthesis protein FliP | VFG2016 | Protein | 1e-43 | 58 |
| fliP | YP_001676432.1 | flagellar biosynthesis protein FliP | VFG1259 | Protein | 1e-45 | 58 |
| fliP | YP_001676432.1 | flagellar biosynthesis protein FliP | VFG2338 | Protein | 5e-42 | 54 |
| fliP | YP_001676432.1 | flagellar biosynthesis protein FliP | VFG2494 | Protein | 3e-45 | 53 |
| fliP | YP_001676432.1 | flagellar biosynthesis protein FliP | VFG0044 | Protein | 2e-23 | 43 |
| fliP | YP_001676432.1 | flagellar biosynthesis protein FliP | VFG0188 | Protein | 5e-21 | 41 |
| fliP | YP_001676432.1 | flagellar biosynthesis protein FliP | VFG0394 | Protein | 2e-21 | 41 |
