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Name : Shal_4174 (Shal_4174) Accession : YP_001676373.1 Strain : Shewanella halifaxensis HAW-EB4 Genome accession: NC_010334 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 5073520 - 5075682 bp Length : 2163 bp Strand : - Note : TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: slo:Shew_3619 general secretion pathway protein D DNA sequence : ATGAATAATAAGCGGATTAGACGCAGGCTAATCGCCGGTATGGTTATGGGGGCATCTTTATTAGCTCCTCAGCTTGCTTG GTCTGAGCAATATGCGGCTAACTTTAAAGGCACCGATATTCAAGAGTTTATCAACATTGTTGGTAAAAACTTGGAACGGA CTATTATTGTTGATCCAACCGTTCGGGGTAAAATTAACGTCCGTAGTTATGATCTTCTTAACGACGAACAGTACTACCAA TTCTTCCTCAATGTTTTACAAGTCTACGGTTATGCTGTTGTCGAAATGGACAACAACATCATCAAGGTGATCAAGGATAA AGATGCTAAAACCGCATCAATTCGCGTCGCCGATGATAGTGCCCCAGGACTCGGTGATGAGATGGTCACCCGTATCGTCG CGCTTTATAACACCGAGGCCAAGCAACTTGCCCCTTTATTGCGCCAGCTAAATGATAACGCTGGCGGTGGTAACGTTGTT AATTATGACCCTTCAAACGTATTGATGATCTCTGGCCGTGCGGCCGTAGTGAATAAGCTAGTTGAAATCGTACGCCGCGT AGATAAGCAAGGTGATACTGCCGTTGAGGTGGTAAGGCTTGAGTACGCTTCTGCGGGTGAAATTGTACGTATCATCGATA CCCTTTATCGCTCTACTGCGAATCAGGCACAGATGCCAGGTCAGGCGCCAAAAGTGGTGGCCGATGAGCGTATTAACGCG GTAGTTGTCAGTGGCGATGAGAAGAGCCGTGAGCGTGTGGTTAAACTCATTAAGAAGCTCGATGCAGAGCAGGCAACCAC AGGTAACACCAAGGTGCGCTACCTGCGTTATGCCAAGGCTGAAGATTTAGTTGAAGTATTAACCGGTTTTGCTGAGCAGC TTGTTGATGACAAGGGCGCGCCACAAGGTGGCGGCAGCAAACGTCGTAACGAAATTAATATTATGGCTCACACCGATACC AATGCCTTGGTGATTAGCGCCGAGCCTGATCAGATGCGCACCATTGAGAGTGTCATTAATCAATTGGATATACGCCGTGC ACAGGTATTGGTTGAAGCGATTATCGTCGAAGTCGCTGAAGGTGATGATGTTGGCTTTGGTGTGCAGTGGGCCACAGAAG CTGGCGGTGGTACCCAGTTTAATAATCTAGGCCCTACCATTGGTGAAATTGGTGCTGGTATTTGGCAAGCACAAGGTGAA GAAGGTTCTACCGTTTGTAACGACGGCACTTGTACCGAGAACCCTGATACCCGTGGTGACATTACGCTATTGGCACAGGC GCTAGGCAAGGTAAACGGTATGGCATGGGGCGTGGCTATGGGTGACTTTGGTGCCTTGATCCAAGCGGTTTCCAGTGATA CCAAGTCAAACGTATTAGCAACGCCATCTATCACTACCTTAGATAACCAAGAGGCCTCGTTTATCGTCGGTGACGAAGTG CCGATTTTGACCGGTAGCCAAAACTCCAGTAACGGTAACAGTAATCCATTCCAAACCGTTGAACGTAAAGAGGTCGGCGT AAAGCTTAAAGTCGTCCCTCAGGTTAACGAAGGTAACGCCGTTAAGCTGACTATTGAGCAGGAAGTGTCAGGTATTAACG GCAAAACGGGTGTCGACGTAACCTTCGCGACTCGCCGTTTAACCACCACGGTTATGGCCGACTCGGGTCAGATCGTGGTG CTAGGTGGTTTAATTAAAGAAGAGGTGCAAGAGTCGGTACAGAAGGTACCGTTCTTAGGCGATATCCCAATTATCGGTCA TCTGTTTAAGTCGTCTTCGAGTGGTAAGAAAAAAACCAACTTGATGGTGTTTATCAAGCCGACGATTATTCGTGACGGTA TCACCATGGAAGGCATTGCAGGGCGTAAGTATAACTACTTCCGCGCATTACAGCTTGAACAGCAAGAGCGCGGCGTTAAC TTGATGCCAAATACCGATGTGCCAATCCTCGAAGAGTGGAATCAGGCTGATTATTTACCACCAGAGGTCAATGAAGTACT TAACCGTTACAAAGAAGGTAAAGGCTTAGATACTAAGATGCGTCAAACCGATCCGACACTTAAGAGTATTTCAGACAGTA AGAATACCGATGCTGCTGAAGTGGATAAGCAGTCGACAGAGTTAGAACATACTGGTACGGATAAAGATTCAAGCGATGAA TGA Protein sequence : MNNKRIRRRLIAGMVMGASLLAPQLAWSEQYAANFKGTDIQEFINIVGKNLERTIIVDPTVRGKINVRSYDLLNDEQYYQ FFLNVLQVYGYAVVEMDNNIIKVIKDKDAKTASIRVADDSAPGLGDEMVTRIVALYNTEAKQLAPLLRQLNDNAGGGNVV NYDPSNVLMISGRAAVVNKLVEIVRRVDKQGDTAVEVVRLEYASAGEIVRIIDTLYRSTANQAQMPGQAPKVVADERINA VVVSGDEKSRERVVKLIKKLDAEQATTGNTKVRYLRYAKAEDLVEVLTGFAEQLVDDKGAPQGGGSKRRNEINIMAHTDT NALVISAEPDQMRTIESVINQLDIRRAQVLVEAIIVEVAEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGIWQAQGE EGSTVCNDGTCTENPDTRGDITLLAQALGKVNGMAWGVAMGDFGALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEV PILTGSQNSSNGNSNPFQTVERKEVGVKLKVVPQVNEGNAVKLTIEQEVSGINGKTGVDVTFATRRLTTTVMADSGQIVV LGGLIKEEVQESVQKVPFLGDIPIIGHLFKSSSSGKKKTNLMVFIKPTIIRDGITMEGIAGRKYNYFRALQLEQQERGVN LMPNTDVPILEEWNQADYLPPEVNEVLNRYKEGKGLDTKMRQTDPTLKSISDSKNTDAAEVDKQSTELEHTGTDKDSSDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 8e-147 | 52 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 1e-153 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shal_4174 | YP_001676373.1 | general secretion pathway protein D | VFG2047 | Protein | 2e-145 | 52 |
