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Name : Shal_4173 (Shal_4173) Accession : YP_001676372.1 Strain : Shewanella halifaxensis HAW-EB4 Genome accession: NC_010334 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 5071956 - 5073527 bp Length : 1572 bp Strand : - Note : KEGG: slo:Shew_3618 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase DNA sequence : ATGAATGATAATCAAATTCCGGTCGATGAAGAGCTAGCGCAAGTATCGAGTGAGCTTGGGCTGGTGTCTGAGGAAGAAGC CGATCAAGTCTTCCATTCGAGCAGCAAAGAGCGATTGCCGTTTGCCTTTGCCCATCGCTTTAAGGTTGCGCTTGCTGTCG ATGATGAAGGCAAGTTGTCGCTATATTATACTCAAGGCACGCCACTGAGTGCCCTGCTGGAAGTGCGCCGCTACTGCGGT AAAGAGTTACCACTGATAAAGCTAGAAGACGCTGCCTTTGAGGCGCGATTGACACAAGCTTATCAGGCAAACTCTTCTGA AGCGCAGCAGATGATGGAAGATATCGGTAATGAGATGGACTTGTTCACTCTTGCCGAAGAACTACCGCAAACTGAAGATC TGCTAGAGGGTGATGATGATGCGCCGATTATTAAGTTAATTAATGCACTATTATCTGAAGCCATCAAAGAAGAAGCCTCC GATATTCATATCGAAACCTATGAGAAGCAGTTGATTGTTCGCTTCCGTGTCGATGGCATTTTGAAAGAAGTCCTTAAACC TAATCGTAAGCTGTCATCTCTGTTGGTATCACGTATCAAGGTTATGGCGCGTCTCGATATTGCCGAAAAACGGGTACCGC AAGATGGCCGTATTTCGCTGCGTATCGCCGGTCGCGCCGTCGATGTGCGTGTATCTACCATGCCATCAAGTCATGGTGAG CGAGTGGTACTGCGTCTACTTGATAAGAATACGGGTAATTTAGATTTAGAGCAGCTCGGTATGACCGAGTCTGTACGTCA TCAGTTTGATGAACTTATCCGTAGACCTCACGGCATTATTTTGGTGACCGGTCCGACAGGCTCGGGTAAGAGTACCACGC TATACGCGGGTCTTACCGAGCTGAATTCAAAAGACACCAACATTCTTACCGTTGAAGACCCGATAGAATATGAGCTTGAA GGCATAGGTCAGACTCAGGTTAACACTAAGGTCGATATGACTTTCGCTCGTGGCTTACGTGCTATTTTGCGTCAAGATCC TGATGTGGTGATGATTGGTGAAATTCGAGATCTTGAAACTGCACAGATTGCGGTTCAAGCGTCACTTACTGGTCATATGG TTATCTCAACCTTACATACCAATACCGCATCGGGCGCCATTACTCGTCTGCAAGATATGGGGGTTGAACCTTTCCTTGTG TCTTCGAGTTTACTCGGTGTGCTAGCGCAGCGTCTTATTCGAACTCTGTGCTCAAGCTGTAAAGAGGAGCACACCCCGGA TGATCGTGAAAGAGAATTGTTAGGTATTACCGCTGACGATCCGCGGGTTATTTTCCGCGCTAAAGGCTGTCAGGCTTGTG GTCATAATGGCTATCGTGGCCGTACAGGTATTCATGAGCTATTAACCGTCGATGATACCGTGCGTGAACTTATCCATACT GGCCGAGGCGAGCTCGCTATTGAGAAACACATTCGTCAATCAGTACCGAGTATTCGTCACGACGGTATGAGTAAGGTGCT TGCGGGTAAAACCACCCTCGAAGAAGTGCTGCGAGTCACTCGAGAGGAGTAG Protein sequence : MNDNQIPVDEELAQVSSELGLVSEEEADQVFHSSSKERLPFAFAHRFKVALAVDDEGKLSLYYTQGTPLSALLEVRRYCG KELPLIKLEDAAFEARLTQAYQANSSEAQQMMEDIGNEMDLFTLAEELPQTEDLLEGDDDAPIIKLINALLSEAIKEEAS DIHIETYEKQLIVRFRVDGILKEVLKPNRKLSSLLVSRIKVMARLDIAEKRVPQDGRISLRIAGRAVDVRVSTMPSSHGE RVVLRLLDKNTGNLDLEQLGMTESVRHQFDELIRRPHGIILVTGPTGSGKSTTLYAGLTELNSKDTNILTVEDPIEYELE GIGQTQVNTKVDMTFARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHMVISTLHTNTASGAITRLQDMGVEPFLV SSSLLGVLAQRLIRTLCSSCKEEHTPDDRERELLGITADDPRVIFRAKGCQACGHNGYRGRTGIHELLTVDDTVRELIHT GRGELAIEKHIRQSVPSIRHDGMSKVLAGKTTLEEVLRVTREE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-156 | 65 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-156 | 65 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shal_4173 | YP_001676372.1 | general secretory pathway protein E | VFG2048 | Protein | 2e-156 | 65 |
| Shal_4173 | YP_001676372.1 | general secretory pathway protein E | VFG0182 | Protein | 7e-153 | 64 |
| Shal_4173 | YP_001676372.1 | general secretory pathway protein E | VFG1876 | Protein | 1e-138 | 58 |
| Shal_4173 | YP_001676372.1 | general secretory pathway protein E | VFG2426 | Protein | 1e-78 | 45 |
